RetrogeneDB ID:
retro_mputfur_576
Organism:
Location:
GL896921.1:7623261-7624014 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.24 %
Coverage:
90.32 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_576
GAGGATGTCCTCAAATTCCTTGCAGCGGGAACCCATTTAGGTGGCACCAACCTTGACTTC
CAGATGGAACAGTACATCTACAAAAGGAAAAGTGATGGTATCTACATCATAAATCTGAAG
AGGCCCTGGGAGAAGCTTCTGCTGGCAGCTTGTGCCATTGTTGCCATTGAAAACCCAGCT
GATGTTAGTGTCATATCGTCCAGGAATACTGGCCAGCGAGCTGTGCTGAAATTTGCTGCT
GCAGCTGGAGCCACTCCCATTGCTGGTCGCTTCACTCCTGGAACATTCACTAACCAGATC
CAGGCAGCCTTCCTAGAGCCAAGACTTCTGGTGGTTACTGATCCCAGGGCTGACCACCAG
CCTCTTACAGAGGCGTCTTATGTTAACCTGCCTACCATTGTTCTGTGTAACACAGACTCT
CCTCTTCGCTACGTGGACATTGCCATCCCCAACAACAAGGGAGCTTGCTCAGTGGGTCTG
ATGTGATGGATGCTGGCCAGGGAAGTTCTGCGCATGCGTGGCACCATTTCCCGTGAACAC
CCGTGGGAGGTCATGCCTGATCTCTGCTTCTACAGAGATCCTGAAGAGACTGAAAAGGAA
GAGCAGGCTGCTGCTGAAAAGGCTGTGACCAAGGAAGAATTCCAGGGTGAATGTACGGCT
CCAGCTCCTGAGTTCACGGCTACTCAGCCTGAAGTTGCAGACTGGTCTGAAGGCGTGCAG
GTGCCCTCTGTGCCTAGTCAGCAGTTCCCTACT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQI
EDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKR.WEKLLLAA.AIVAIENPADVSVISSRNTGQRAVLKFAAA.GATPIAGRFTPGTFTNQI
Retrocopy
EDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRPWEKLLLAACAIVAIENPADVSVISSRNTGQRAVLKFAAAAGATPIAGRFTPGTFTNQI


Parental protein
QAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEK
QAAF.EPRLLVVTDPRADHQPLTEASYVNLPTI.LCNTDSPLRYVDIAIP.NNKGA.SVGLM.WMLAREVLRMRGTISREHPWEVMPDL.FYRDPEE.EK
Retrocopy
QAAFLEPRLLVVTDPRADHQPLTEASYVNLPTIVLCNTDSPLRYVDIAIP-NNKGACSVGLM*WMLAREVLRMRGTISREHPWEVMPDLCFYRDPEETEK


Parental protein
EEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPT
EEQAAAEKAVTKEEFQGE.TAPAPEFTATQPEVADWSEGVQVPSVP.QQFPT
Retrocopy
EEQAAAEKAVTKEEFQGECTAPAPEFTATQPEVADWSEGVQVPSVPSQQFPT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide