RetrogeneDB ID:
retro_mputfur_579
Organism:
Location:
GL896922.1:15985959-15986472 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
87.93 %
Coverage:
78.18 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
PRELID1
Parental gene aliases:
No gene alias available
Parental gene description:
PRELI domain containing 1 [Source:HGNC Symbol;Acc:30255]

Genomic region (view in browser)





>retro_mputfur_579
GTGCACCGGGAAGTGACCCCTGACCAGAAACTCCTGTCCTGGCATCTCCTGACCAAGACC
AACAGGATGCCCAGCTGGGCCGAAGGGACTGTTTCCTGCCAATGTCACTCACTCGGTGTA
CATCCTGGAGGATTCTATTGTGGACCCGCAGAACCAGACCATGACTGCCTTCACCTGGAA
CATCAACACGCTCGGCTGATGGTGGTGGAGGAACGATGTGTTTACTGTGTGAACTCTGAT
GACTGCGGCTGGACCGAAATCCGCCGGGAAGCCTGGGTCTCCTCTAGCTCATTTGGTGTC
TCCAGAGCTGTCCAGGAGTTTGGTCCTGCCCAGATCAAAAGCAATGTGACCAAGACTATG
AAGGGCTTTGAGTACATCTTGGCCAAGCTGCAGGGTGAGGCCCCGTCCAAAACCCTCGTT
GAAACAGCCAAGGAAGCCAAGGAGCAGGTGAAGGAGATGGCACTGGCAGCTACAGAGAAG
GTTAAGGACCTTGTCAGCAAGGCAGCCACCAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VHREVTPDQKLLSRRLLTKTNRMPRWAER-LFPANVAHSVYILEDSIVDPQNQTMTTFTWNIN-HARMMVVEERCVYCVNSDNSGWTEIRREAWVSSSLF
VHREVTPDQKLLS..LLTKTNRMP.WAE..LFPANV.HSVYILEDSIVDPQNQTMT.FTWNIN.HAR.MVVEERCVYCVNSD..GWTEIRREAWVSSS.F
Retrocopy
VHREVTPDQKLLSWHLLTKTNRMPSWAEG\LFPANVTHSVYILEDSIVDPQNQTMTAFTWNIN/HARLMVVEERCVYCVNSDDCGWTEIRREAWVSSSSF


Parental protein
GVSRAVQEFGLARFKSNVTKTMKGFEYILAKLQGGEAPSKTLVETAKEAKEKAKETALAATEKAKDLASKAATK
GVSRAVQEFG.A..KSNVTKTMKGFEYILAKLQG.EAPSKTLVETAKEAKE..KE.ALAATEK.KDL.SKAATK
Retrocopy
GVSRAVQEFGPAQIKSNVTKTMKGFEYILAKLQG-EAPSKTLVETAKEAKEQVKEMALAATEKVKDLVSKAATK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide