RetrogeneDB ID:
retro_mputfur_580
Organism:
Location:
GL896923.1:5655361-5655674 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.22 %
Coverage:
66.88 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_580
CACAAGTGTTACGTGGCAGAACCCAAAAAGCTTACAGTGTTACCCAACTTGCTGTTGGCA
TTGTCATAACGAACAAGGGCATGATTCTTGCCCCCAAAATTAATGTATGCATTCAGCATA
ATAAGCACTCCAAGGGCTGAGGTAGCTTCCTGAAGTATGTGAAGGAAAATGATGAGAAAA
AGAAGGAAGCCAAAGAGGAAGGTACCTGGTTTTAGTGAAGCACCAGCCCGCTCCACCCAG
AGAAGCACATTTTTATGACAACCAACAGAAGGGATCTGAGCTACTGGGATCCATTCCCAA
TGAATTCATGGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
HKCY-HGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTW-VQLKRQPAPPREAHFVRTNGKEPELL
HKCY..G.T...Y.VTQ.AVGIV.....KG.ILA..INV.I.H.KHSK...SFLK.VKEND.KKKEAKE.GTW.V..K.QPAPPREAHF.....K..ELL
Retrocopy
HKCY/RGRTQKAYSVTQLAVGIVITN--KGMILAPKINVCIQHNKHSKG*GSFLKYVKENDEKKKEAKEEGTW/VLVKHQPAPPREAHFYDNQQKGSELL


Parental protein
EPIPYEFMA
..IP.EFMA
Retrocopy
GSIPNEFMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide