RetrogeneDB ID:
retro_mputfur_583
Organism:
Location:
GL896923.1:11820583-11821107 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.56 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
CNBP
Parental gene aliases:
No gene alias available
Parental gene description:
CCHC-type zinc finger, nucleic acid binding protein [Source:HGNC Symbol;Acc:13164]

Genomic region (view in browser)





>retro_mputfur_583
ATGAGCAGTAATGAGTGTTTCCAGTGTGGACGATCTGACTATGAGGCCCAGGAATGCCCT
ACAGGTGGAGGCTGTGGTCTTGGAATAAGAAGCCATGGCAGAGGTGGAAACCTTCGTAGA
GGTTTCCAGTTTGGTTCCTTATCTCTTCCAGACACCTGTTATCACTGTGGTGAGTCTGGT
TATCTTGCAGATGATTGTGGTCTTCATGAGGACACCTGGCTATAATAGCAGTAGACGTGG
CCACATAAACAAGGACTGCCAGGATCCTGAGAGAGAGAGCAATTCTGCTACAGCTGTAGC
AGACCAGGCCATCTGGCTCATGACCGTGACCATAAGGATGAGCAGAAGCGCTATTCTTGT
GGACAGTTTGGACACATTCAAAAAGACTGCCCCAAAGTGAGTGCGATAGGTGTGGTGAGA
CTGGTTACATAGCCATCAACTGCAGGAGAACAAGTGAAGTTGACCTTGACCACTGTGGCA
AGTGAGGAGACCTTGCACGGGAATGCATGACTATAGCCACAGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDAC-YNCGRGGHIAKDCKEPKRE-REQCC
MSSNECF.CGRS...A.ECPTGGG.G.G.RS.GRGG....RGFQF.S.SLPD.CY.CGESG.LA.DC.L.ED...YN..R.GHI.KDC..P.RE....C.
Retrocopy
MSSNECFQCGRSDYEAQECPTGGGCGLGIRSHGRGG-NLRRGFQFGSLSLPDTCYHCGESGYLADDCGLHEDTW\YNSSRRGHINKDCQDPERE/EQFC-


Parental protein
YNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Y.C..PGHLA.D.DH.DEQK.YSCG.FGHIQKDC.KV..C.RCGETG..AINC..TSEV....CG..G.LAREC...ATA
Retrocopy
YSCSRPGHLAHDRDHKDEQKRYSCGQFGHIQKDCPKV/ECDRCGETGYIAINCRRTSEVDLDHCGK*GDLARECMTIATA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide