RetrogeneDB ID:
retro_mputfur_584
Organism:
Location:
GL896923.1:12205650-12206123 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
74.84 %
Coverage:
98.75 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_584
AACTCATAGGGGAAGGGGAAAGGCACCCACTGTATGTTCTCTAGGCCTTTTAGAAAACAG
GCAGGTGTTCCTTTGGCCACATAAATGCCAATCTACAAAAAAGATGGTATTGTTACCATC
AAGGAAACAGGCACTGTTCAAAAAGGAATGCCCCACAGATGTTATGATGGCAAAACTGGG
AGAGTCTACAGTGTTACCCAGCTTGCTGTTGGCATTGTTGTAAAGAACCAAGTTAAAGGC
AAGATTCTTGCCAAGAGAATTAATGTATATATTGAGCATATTAAGCACTCAAAGAGCTGA
GATAGCTTCTTGAAGCTCATGAAGGAAAATGATCAGAGAGAGAAGGACGCCAAAAGAAAG
GTACTTGGGTCCAACTGAAGTGCCAGCCTGTCCCACTCAGCAAAGCACATTTTGTAAGAA
CCAGTGGAAAGGAGCCTGGGCTGCTGGAACCCATTTCCTATGAATTTACGGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSR
N..GK..GT..MFSRPFRK...VPLAT.M.IYKK..IV.IK..GTVQKGMPH.CY.GKTGRVY.VTQ.AVGIVV..QVKGKILAKRINV.IEHIKHSKS.
Retrocopy
NS*GKGKGTHCMFSRPFRKQAGVPLAT*MPIYKKDGIVTIKETGTVQKGMPHRCYDGKTGRVYSVTQLAVGIVVKNQVKGKILAKRINVYIEHIKHSKS*


Parental protein
DSFLKRVKENDQKKKEAK-EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
DSFLK..KENDQ..K.AK..KGTWVQLK.QP.P...AHFVRT.GKEP.LLEPI.YEF.A
Retrocopy
DSFLKLMKENDQREKDAK/KKGTWVQLKCQPVPLSKAHFVRTSGKEPGLLEPISYEFTA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide