RetrogeneDB ID:
retro_mputfur_593
Organism:
Location:
GL896923.1:13759687-13760550 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.92 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
SNRPA
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:11151]

Genomic region (view in browser)





>retro_mputfur_593
CTACCTCGGCACCTCTCCATGGCAGTTCCCGAGACCCGCCCCAACCACACTATTTATATC
AACAATCTCAACGAGAAGATCAAGAAGGATGAGCTAAAGAAGTCCCTCTATGCCATCTTC
TCCCAGTTTGGCCAGATCCTGGATATCCTGGTTTCCCGAAGCCTGAAGATGAGGGGCCAG
GCCTTTGTCATCTTCAAGGAGGTCAGCAGTGCCACCAACGCCCTGCGCTCCATGCAGGGT
TTCCCCTTCTACGACAAGCCCATGCGCATTCAGTATGCAAAGACTGACTCGGATATCATT
GCTAAGATGAAGGGCACCTTTGTGGAGCGGGACCGCAAGCGGGAGAAAAGGAAGCCCAAG
AGCCAGGAAACCCCAGCAGCCAAGAAGGCCGTGCAGGGTGGGGCAGCCACCCCTGTGGTG
GGGGCTGTCCAGGGCCCTGTTCTGGGCATGCCCCCGATGACCCAGGCACCCCGCATCATG
CACCACATGCCCGGCCAGCCTCCCTACATACCGCCTCCGGGCAGATCCCGCCCCCAGGCC
TGGCTCCCGGCCAGATCCCACCAGGGGCCCTGCCCCCACAGCAGCTTATGCCGGGCCAGA
TGCTGCCTGCCCAGCCTCTTTCAGAAAATCCACCAAATCACATCTTATTCCTCACCAACT
TGCCCGAGGAGACCAACGAGCTCATGCTGTCCATGCTTTTCAACCAGTTCCCTGGCTTCA
AGGAGGTCCAACTGGTCCCTGGGCGGCACGACATTGCCTTTGTGGAGTTTGACAATGAGG
TCCAGGCAGGGGCCGCTCGGGACGCACTGCAGGGTTTCAAGATCACCCAGAACAATGCCA
TGAAGATCTCCTTTGCCAAGAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LPRHLSMAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDII
LPRHLSMAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDII
Retrocopy
LPRHLSMAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDII


Parental protein
AKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPP-GMIPPPGLAPGQIPPGALPPQQLMPG
AKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAATPVVGAVQGPV.GMPPMTQAPRIMHHMPGQPPY.PPP.G.IPPPGLAPGQIPPGALPPQQLMPG
Retrocopy
AKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAATPVVGAVQGPVLGMPPMTQAPRIMHHMPGQPPYIPPP/GQIPPPGLAPGQIPPGALPPQQLMPG


Parental protein
QMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK
QM.PAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV.LVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK
Retrocopy
QMLPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVQLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide