RetrogeneDB ID:
retro_mputfur_597
Organism:
Location:
GL896924.1:12348841-12349731 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.3 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
Rpl5
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L5 [Source:MGI Symbol;Acc:MGI:102854]

Genomic region (view in browser)





>retro_mputfur_597
ATGGGGTTTGTGAAGGTTGTCAAGAATAAGGCTTACTTCAAGAGATACCAAGTGAAATTC
AGAAGACGTCGAGAGGGTAAAACTGATTATTATGCCAGGAAACGCTTGGTAATTCAAGAT
AAATATAAGTACAACACACCTAAATACAGGATAATAGTTCATGTAACCAACAGAGATATC
ATCTGTCAGATTGCTTATGCCAGCATAGAAGGAGATATGATAGTTTGTGCAGCTGATGCT
CATGAACTCCCAAAGTATGGTGTGAAAGTTGGCCTAACAAATTATGCTGCAGCATATTGT
ACCGGCCTGTTGCTGGCCCGCAGCTCCTTAATAGGTTTGGCATGGACAAGATCTATGAAG
GCCAAGTGGAAGTGACTGGAAATGAGTACAATGTGAAAAGCATTGATGGTCAACCTGGTG
CCTTCACCTGCTATTTGGATGCAGGGTTTGCCAGAACTACTACTGGAAATAAAGTTTTTG
GGGCCCTCAAGGGAGCAGTGGACGGAGGCTTGTCTATCCCTCACAGTACCAAACGATTCC
CTGGTTATGATTCAGAAAGCAAGGAATTCAATGCAGAAGTACATCGAAAGCACATCATGG
GTCAGAATGTTGCAGATTATATGCGTTACCTAATGGAAGAAGACGAAGATGCATACAAGA
AACAATTCTCTCAATACATAAAGAACAACGTAACTCCAGACATGATGGAGGAGATATATA
AGAAAGCTCATGCTGCTATACGAGAGAACCCATTCTATGAGAAGAAGCCTAAGAAAGAAG
TTAAAAAGAAGAGGTGGAATCGTCCCAAAATGTCTCTTGCCCAAAAGAAAGATCGGGTAG
CTCAGAAGAAGGCAAGCTTCCTTCGAGCTCAGGAGCAGGCTGCTGAGAGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYC
MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDK.KYNTPKYR.IV.VTNRDIICQIAYA.IEGDMIVCAA.AHELPKYGVKVGLTNYAAAYC
Retrocopy
MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKYKYNTPKYRIIVHVTNRDIICQIAYASIEGDMIVCAADAHELPKYGVKVGLTNYAAAYC


Parental protein
TGLLLAR-RLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHI
TGLLLAR..LLNRFGMDKIYEGQVEVTG.EYNV.SIDGQPGAFTCYLDAG.ARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHI
Retrocopy
TGLLLAR/QLLNRFGMDKIYEGQVEVTGNEYNVKSIDGQPGAFTCYLDAGFARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHI


Parental protein
MGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDM-EEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES
MGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDM.EE.YKKAHAAIRENP.YEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQE.AAES
Retrocopy
MGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEIYKKAHAAIRENPFYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQEQAAES


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide