RetrogeneDB ID:
retro_mputfur_605
Organism:
Location:
GL896926.1:4927887-4928424 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.83 %
Coverage:
51.29 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
ST13
Parental gene aliases:
No gene alias available
Parental gene description:
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Genomic region (view in browser)





>retro_mputfur_605
GAGGAAAACATTAAGACAGATGAACCATGAAGTGAGGAAAGTGATCTAGAAATTGGAAAT
GAAGGTGTGATTGAACCAGATATTGATGCCCCTCAAGAAATGGAAGATGAAAATGTAGAG
ATAAATGAGGAAATGATGGATCAGGCAAGTGATAAAAAAGTGGTGGTCATTGATGCCCTA
AATGATGGTGAACTACAGAAAGACATTGACTTGTTCACAGATGCCATCAAACCAAGTTCT
CACTTGGCCATTCTGTATGCCAAGAGAGCCAGTGTCTTCATCAAATTACAGAAGCCAAAT
GCTGCCACTCGAGACTATGACAGAGCTATTGAAATAAATCCTGATTCAGTTCAGCCTTAT
AAGTGGCGAGGGAAAGCACACAGACTTCTTGGCCATTGGGAAGAAGCCGCACATGATCTT
GCCCTTGCTTGTAAACTGGATTATGATGAAGACGCTAGTGCAATGCTGAAAGAAGTTCAA
CCGAGGGCCCAGAAAATTGCTGAACATGAGAGAAAGTATGACCAAAAACGTGAAGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EENIKTDEPSSEESDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPN
EENIKTDEP.SEESDLEI.NEGVIEPD.DAPQEM.DEN.EI.EEMMDQA.DKKV..IDALNDGELQK.IDLFTDAIK....LAILYAKRASVFIKLQKPN
Retrocopy
EENIKTDEP*SEESDLEIGNEGVIEPDIDAPQEMEDENVEINEEMMDQASDKKVVVIDALNDGELQKDIDLFTDAIKPSSHLAILYAKRASVFIKLQKPN


Parental protein
AAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREE
AA.RD.DRAIEINPDS.QPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEH.RKY..KREE
Retrocopy
AATRDYDRAIEINPDSVQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHERKYDQKREE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide