RetrogeneDB ID:
retro_mputfur_607
Organism:
Location:
GL896926.1:9511388-9512720 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
96.4 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
TUBB
Parental gene aliases:
No gene alias available
Parental gene description:
tubulin, beta class I [Source:HGNC Symbol;Acc:20778]

Genomic region (view in browser)





>retro_mputfur_607
ATGAGGGAAATCGTGCACATCCAGGCCGGTCAGTGTGGCAACCAGATCGGTGCCAAGTTC
TGGGAGGTAATCAGTGATGAACACGGCATCGACCCCACTGGAACCTACCACGGTGACAGC
GACCTGCAGCTGGATCGCATCTCTGTGTACTACAATGAAGCTACAGGTGGCAAATATGTT
CCTCGTGCTATCTTGGTTGATCTAGAACCCGGGACCATGTACTCTGTTCGCTCAGGTCCT
TTTGGGCAGATATTCAGACCAGACAACTTTGTTTTTAGTCAGTCTGGGGCAGGCAACAAC
TGGGCCAAAGGCCACTACACAGAGGGTGCTGAGCTGGTTGACTCAGTCCTGGATGTGGTG
AGGAAGGAGGCGGAGAGCTGTGACTGCCTACAGGGCTTCCAGCTGACCCACTCACTAGGT
GGGGGCACTGGCTCTGGAATGGGCACCTTGCTCATCAGCAAGATCCGAGAAGAGTATCCT
GACCGCATCATGAACACCTTCAATGTGGTACCCTCACCCAAAGTGTCTGACACTGTGGTC
GAGCCCTACAATGCCACCCTCTCCATCCATCAGTTGGTAGAAAACACAGATGAGACCTAC
TGCATTGACAACGAAGCCCTTTATGACATCTGCTTCCGCACTCTCAAGCTGACCACGCCA
ACCTACAGAGACCTGAACCACCTCGTCTCAGCCACCATGAGTGGTGTCACCACCTGCCTC
CGCTTCCCTGGTCAACTCAATGCTGACCTCCGGAAGCTAGCCGTCAACATGGTGCCCTTC
CCACGGCTCCACTTCTTCATGCCTGGCTTTGCACCTCTGACCAGCCATGGAAGCCAGCAG
TATCGGGCCCTCACTGTGCCTGAACTCACCCAGCAGGTCTTTGATGCCAAGAACATGATG
GCTGCCTGTGACCCCCGCCATGGCCGTTACCTCACTGTGGCTACTGTCTTCCATGGGTGG
ATGTCCATGAAGGAGGTAGATGAGCAGATGCTCAATGTGCAGAATAAGAATAGCAGCTAC
TTTGTGGAGTGGATCCCCAACAACGTCAAGACAGCAGTCTGAGATATCCCACCTCGTGGC
CTCAAGATGGCAGTCACCTTCATTGGAAATAGCACAGCCATCCAGGAGCTCTTCAAGCAC
ATCTCAGAGCAGTTCACGGCCATGTTCCGGCGCAAGGCTTTCCTCCACTGGTACACAGGT
GAGGGCATGGACAAGATGGAATTCACTGAAGCTGAGAGCAACATGAATGACCATGTCTCC
GAGTACCAGCAGTACCAGGATGCCACCACAGAAGAGGAGGAGGATTTCGGTGAGGAGGCT
GAAGAGGAGGCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTM.SVRSGPFGQIFRPDNFVF.QSGAGNN
Retrocopy
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMYSVRSGPFGQIFRPDNFVFSQSGAGNN


Parental protein
WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNIFSVVPSPRVSDTVVEPYNATLSVHQLVENTDETY
WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMN.F.VVPSP.VSDTVVEPYNATLS.HQLVENTDETY
Retrocopy
WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFNVVPSPKVSDTVVEPYNATLSIHQLVENTDETY


Parental protein
CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
CIDNEALYDICFRTLKLTTPTY.DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTS.GSQQYRALTVPELTQQVFDAKNMM
Retrocopy
CIDNEALYDICFRTLKLTTPTYRDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSHGSQQYRALTVPELTQQVFDAKNMM


Parental protein
AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG
AACDPRHGRYLTVA.VF.G.MSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAV.DIPPRGLKMAVTFIGNSTAIQELFK.ISEQFTAMFRRKAFLHWYTG
Retrocopy
AACDPRHGRYLTVATVFHGWMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAV*DIPPRGLKMAVTFIGNSTAIQELFKHISEQFTAMFRRKAFLHWYTG


Parental protein
EGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEEDFGEEAEEEA
EGMD.MEFTEAESNMND.VSEYQQYQDAT.EEEEDFGEEAEEEA
Retrocopy
EGMDKMEFTEAESNMNDHVSEYQQYQDATTEEEEDFGEEAEEEA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide