RetrogeneDB ID:
retro_mputfur_612
Organism:
Location:
GL896926.1:85395-85980 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.31 %
Coverage:
58.56 %
Frameshifts:
4
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_612
GATGCCCCCATATTTGTGATGGGCAATAGCTCATGTACTACCAACTGCTTGGTCCCGCTG
GCCAAGGTTATCCCATGACAATTTTGACATTGTGGAGGGACTCATGACCACAGTCCATAC
CATCACTGCCACCCAGAGGACTATGGACAGATCCTTGGGGAAGCTATGACATGAGCCAAA
GAGGCTGCCCAGAATACCATTTCTGCTTCTAAAGTGCCACCAGGGCTGTAAGGCAAGGTC
ATTCCTGAGCCAAATGGTAAGCCCACTGACAAGGCCTTTCATATTTCTACCCCCCACTCT
GTCAATTTTGGATCTGTCCTGCCTCCTGAAGAAAGTTGCCAAATAGAGTGACATTAAGAA
GGTGGTAAAACAAGAATCCGATGGCTTCCTCGAGGACATCCTGAGCAATGCTGAGGATCA
GGTTGTCTCCTGTGACTTTAACAATGACACCTACTCTTCTACCTTTGATGCTGGGACTGG
CATTGCTCTCAGTGACCACATTGTCAAGCTCCTTTCCTGATGTGACATACATTTGGCTAC
AGCAACTGGGTGGTGGATGTTATGATCCACATGGCCTTCAGGGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DNSLKIVSNASCTTNCLAPLAKVI-HDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRD-GRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP
D.......N.SCTTNCL.PLAKVI.HDNF.IVEGLMTTVH.ITATQ.T.D...GKL.......AAQN.I.AS.......GKVIPE.NGK.T..AF...TP
Retrocopy
DAPIFVMGNSSCTTNCLVPLAKVI\HDNFDIVEGLMTTVHTITATQRTMDRSLGKL*HE/AKEAAQNTISASKVPPGL*GKVIPEPNGKPTDKAFHISTP


Parental protein
N-VSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYD-NEFGYSNRVVDLMVHMASKE
...S..DL.C.L.K.AK..DIKKVVKQ.S.G.L..IL...EDQVVSCDFN.DT.SSTFDAG.GIAL.DH.VKL.S..D...FGYSN.VVD.M.HMA..E
Retrocopy
H\LSILDLSCLLKKVAK*SDIKKVVKQESDGFLEDILSNAEDQVVSCDFNNDTYSSTFDAGTGIALSDHIVKLLS*CD/HTFGYSNWVVDVMIHMAFRE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide