RetrogeneDB ID:
retro_mputfur_615
Organism:
Location:
GL896926.1:9360571-9361549 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
99.08 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
NUP37
Parental gene aliases:
No gene alias available
Parental gene description:
nucleoporin 37kDa [Source:HGNC Symbol;Acc:29929]

Genomic region (view in browser)





>retro_mputfur_615
ATGAAGCAAGATGCCACAAGAAATGCTGCCTACACTGTGGATTGTGAAGATTATGTGCAT
GTGGTAGAATTTAATCCCTTTGACAGTGGGGATCCAGGAAACCTAATTGCATATGGTGGC
GGTAATTATGTGGTGGTTGGCATATGTACATTTCAGGAGGAAGAAGCAGACGTTGAAGGA
ATTCAATATAAAACACTACGAACATTTCAGCATGGAGTCAGGGTCGATGGCATAGCATGG
AGCCCAGAAACTAGACTTGATTCATTGCCTCCAGTAATCAAATTTTGTACTTCAGCTGCT
GATATGAAAATAAGATTATTTACTTCAGATCTTCAAGATAAAAATGAGTATAAGGTTTTA
GAGGGCCATTCAGATTTCATTAATGGTTTGGTGTTTGATCCCAAAGAAGGTCAAGAAATT
GCAAGTGTGAGTGATGATCATACCTGCAGGATTTGGAACTTGGAAGGAATGCAGACAGCT
CATTTTGTTCTTCATTCCCCTGGAATGAGTGTGTGCTGGCATCCTGAGGAAAGTTTTAAG
CTGATGGTTGCAGAGAAGAATGGAACAATCCGGTTTTATGATCTTTTGACTCAACAGGCT
ATTTTATCTCTTGAATCAGAACAGATGCCATTAATGTCAGCCCATTGGTGCTTAAAAAAT
ACCTTCAAAGTTGGAGCTGTTGCAGGAAATGATTGGTTAATTTGGGATATTACTCGATCC
AGTTATCCTCAAGATAAGAGACCTGTCCACATGGATCAAGCCTGTTAATTCAGGTGGTCC
ACAATTAATGAGAACTTGTTTGCAACCACTGGTTATCCTGGCAAAATTGCAAGCCAGTTT
CAAATTCATCATTTAGGACACCCTCAGCCTGTCCTCATTGGTTCTGTAGCCATCGGATCT
GGCCTTTCCTGGCAAAGAACACTCCCACTGTGTGCAATTGGAGGAGACCACAAGCTGTTG
TTTTGGGTGACTGAAATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKQDATRNAAYTVDCEDYVHVVEFNPFDSGDPGNLIAYGGGNYVVVGICTFQEEEADVEGIQYKTLRTFQHGVRVDGIAWSPETRLDSLPPVIKFCTSAA
MKQDATRNAAYTVDCEDYVHVVEFNPFDSGDPGNLIAYGGGNYVVVGICTFQEEEADVEGIQYKTLRTFQHGVRVDGIAWSPETRLDSLPPVIKFCTSAA
Retrocopy
MKQDATRNAAYTVDCEDYVHVVEFNPFDSGDPGNLIAYGGGNYVVVGICTFQEEEADVEGIQYKTLRTFQHGVRVDGIAWSPETRLDSLPPVIKFCTSAA


Parental protein
DMKIRLFTSDLQDKNEYKVLEGHSDFINGLVFDPKEGQEIASVSDDHTCRIWNLEGMQTAHFVLHSPGMSVCWHPEESFKLMVAEKNGTIRFYDLLTQQA
DMKIRLFTSDLQDKNEYKVLEGHSDFINGLVFDPKEGQEIASVSDDHTCRIWNLEGMQTAHFVLHSPGMSVCWHPEESFKLMVAEKNGTIRFYDLLTQQA
Retrocopy
DMKIRLFTSDLQDKNEYKVLEGHSDFINGLVFDPKEGQEIASVSDDHTCRIWNLEGMQTAHFVLHSPGMSVCWHPEESFKLMVAEKNGTIRFYDLLTQQA


Parental protein
ILSLESEQMPLMSAHWCLKNTFKVGAVAGNDWLIWDITRSSYPQDKRPVHMDQACLFRWSTINENLFATTGYPGKIASQFQIHHLGHPQPVLIGSVAVGS
ILSLESEQMPLMSAHWCLKNTFKVGAVAGNDWLIWDITRSSYPQDKRPVHMDQAC.FRWSTINENLFATTGYPGKIASQFQIHHLGHPQPVLIGSVA.GS
Retrocopy
ILSLESEQMPLMSAHWCLKNTFKVGAVAGNDWLIWDITRSSYPQDKRPVHMDQAC*FRWSTINENLFATTGYPGKIASQFQIHHLGHPQPVLIGSVAIGS


Parental protein
GLSWHRTLPLCAIGGDHKLLFWVTEM
GLSW.RTLPLCAIGGDHKLLFWVTEM
Retrocopy
GLSWQRTLPLCAIGGDHKLLFWVTEM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide