RetrogeneDB ID:
retro_mputfur_617
Organism:
Location:
GL896926.1:11566332-11566771 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.25 %
Coverage:
74.76 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
SARNP
Parental gene aliases:
No gene alias available
Parental gene description:
SAP domain containing ribonucleoprotein [Source:HGNC Symbol;Acc:24432]

Genomic region (view in browser)





>retro_mputfur_617
GAGATGGTGGAGCACTGTCAGCTGAAGCTTGTTGAACTAAAGCAGGTATGTCGTGCTCAT
GGTTTGGAGACCAAGGGGATAAAACAAGATCTCATCAACAGGCTCCAGGCATATCTTGAA
GAGGAGGCAAATGAAGATGTACTGGAGAGGAAAACAGAGGAAGAAGAACCTATCAAGGAG
GGAGAACCCCTCCGAGGAAACTGCGGATGAGGCAGCAGAGAGGAAAGTGGTAAAAATTAC
TTCTGAGATAGCACAGGCGGAGAGAAGGTAGAAGAGAGCTGAATGAGTCCATGTATCCAT
GAGTTTGGAGAGTAAGAAAGTTGCTCAGGCAGCGAGATTTGGTGTTTCTTCAGTTCTATC
CAAAGGCCTGTCATCTGACGCCAAGATTATGGTTAACCTGGATAAACTAAAGAAAAGAGC
TCAAAGATTTCGTTTGAAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ETVELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLEEHAEEEANEEDVLGDETEEEEPKPIELPVKE-EEPPEKTVDVAAEKKVVKITSEIPQTER
E.VE...LKL.ELKQ.C.A.GLETKGIKQDLINRLQAYL....EEEANE.DVL..E...EE....E.P.KE.E.P.E.T.D.AAE.KVVKITSEI.Q.ER
Retrocopy
EMVEHCQLKLVELKQVCRAHGLETKGIKQDLINRLQAYL----EEEANE-DVL--ERKTEE----EEPIKE\ENPSEETADEAAERKVVKITSEIAQAER


Parental protein
MQKRAERFNVPVSLESKKAARAARFGISSVPSKGLSSDAKPMVNLDKLKERAQRFGLN
..KRAE...V..SLESKK.A.AARFG.SSV.SKGLSSDAK.MVNLDKLK.RAQRF.LN
Retrocopy
R*KRAE*VHVSMSLESKKVAQAARFGVSSVLSKGLSSDAKIMVNLDKLKKRAQRFRLN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide