RetrogeneDB ID:
retro_mputfur_618
Organism:
Location:
GL896926.1:11792326-11792881 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.63 %
Coverage:
90.29 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_618
GGTCCGCCCGAGACCCCCTGAGCGCCAACCCTGGTCCCCCCGGCGCGGTCCCATTTCCAC
TCCAACAAGATGAAAGAAACTATCATGAACCAGGAGAAACTCGCTAAACTGCAAGCACAA
GTGCACATTGGTGGGAAAGGAACTCCTCGCCGAAAGAAGAAGGTGGTTCATAGAACAGCT
ACAGCAGATGATAAAAAACTTCAGTTCTCCTTAAAGGAGTTAGGGGTAAACAATATCTCT
GGTATTGAAGAAGTAAATATGTTCACAAACCAAGGAACAGTGATCCACTTTAACAACCCC
AAAGTTCAGGCATCGCTGGCAGCAAACACTTTCACCATTACAGGCCATGCTGAGACAAAG
CAGTTGACAGAAATGCTACCCAGTATCTTAAACCAACTTGGTGCAGACAGTCTGACTAGT
TTAAGAAGACTGGCTGAAGCTCTGCCCAAACAATCTGTGGATGGAAAAGCACCACTTGCT
ACCGGAGAGGAGGATGATGATGAAGTTCCAGATCTTGCGGAGAATTTTGATGAAGCTTCC
AAGAATGAAGCAAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GCPGGEATPSLPPPRGGTRGQEPQMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNN
G.P.....P.L.PP..........MKETIMNQEKLAKLQAQV.IGGKGT.RRKKKVVHRTATADDKKLQFSLK.LGVNNISGIEEVNMFTNQGTVIHFNN
Retrocopy
GPPETP*APTLVPP-ARSHFHSNKMKETIMNQEKLAKLQAQVHIGGKGTPRRKKKVVHRTATADDKKLQFSLKELGVNNISGIEEVNMFTNQGTVIHFNN


Parental protein
PKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN
PKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGE.DDDEVPDL.ENFDEASKNEAN
Retrocopy
PKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEEDDDEVPDLAENFDEASKNEAN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide