RetrogeneDB ID:
retro_mputfur_626
Organism:
Location:
GL896927.1:4155765-4156065 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
64.36 %
Coverage:
63.29 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS11
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S11 [Source:HGNC Symbol;Acc:10384]

Genomic region (view in browser)





>retro_mputfur_626
AGGGCACCTACACTGACAAATGTCCCTATCCACGGGCAGATCCTGGCTGGTGTGGTCACT
GACCAAGATGAAGCTGAGAAGACCACTGTCATCTGCTAAGACTACCTCCACTACATCCAA
AAGTACTTCTTCAAGAAACACCACAAGAACATGTTCATGTACCTGTCCCCCCACTTCAGG
GATGTCCAGATTGGTGACATGGTCACAGTGGGCAAGTGCCAGCCCTTGGGAAAGACTGTG
TGGTTCAACGTGCTCCAAGTCATAAAGGCCCCTGGCACCAAGAAGCAATTCCAGAAATTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KCPFTGNVSIRGRILSGVVTKM-KMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQK
..P...NV.I.G.IL.GVVT.......T.VI..DYLHYI.KY..F.K.HKNM...LSP.FRDVQIGD.VTVG.C.PL.KTV.FNVL.V.KA.GTKKQFQK
Retrocopy
RAPTLTNVPIHGQILAGVVTDQDEAEKTTVIC*DYLHYIQKY-FFKKHHKNMFMYLSPHFRDVQIGDMVTVGKCQPLGKTVWFNVLQVIKAPGTKKQFQK


Parental protein
F
F
Retrocopy
F


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide