RetrogeneDB ID:
retro_mputfur_627
Organism:
Location:
GL896927.1:10190681-10192607 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
93.98 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Heat shock cognate 71 kDa protein [Source:UniProtKB/TrEMBL;Acc:G9K4X7]

Genomic region (view in browser)





>retro_mputfur_627
ATGTCTAAGGGACCTGCAGTTGGCATTTATCTTGGCACCACCTACTCCTGCATGGGTGTC
TTCCAGCACAGGAAAGTGGAAATAATTGCCAATGATCAGGGAAACCGGACCACCCCAAGT
TATGTCGCCTTCACGGACACCGAACAATTGATCGGTGATGCTGCGAAGAACCAAGTTGCG
ATGAACCCCACCAACACAGTTTTTGATGCCAAACGCCTGATTGGATGGAGATTTGATGAT
GCTGTTGTCCAGTCTGATATAAAGCATTGGCCTTTCATGGTGGTGAATGATGCTGGCAGG
CCCAAGGTCCAAGTAGAATACAAGGGAGAAACAAAAAGGTTTTATCCAGAGGAGGTGTCT
TCTATGGTTTTGACGAAAATGAAGGAAATCGCAGAGGCTTATCTTGGGAAGAGTTACCAA
CGCAGTTGTCACAGTACCTGCGTACTTCAATGATTCTCAGCATCAGGCTACCAAAGATGC
TGGAACTATTGCTGGTCTCAGTGTACTTCGAATCATCAATGAGCCAACTGCTGCTGCTAT
TGCTTATGGCTTAGACAAAAAAGTTGGAGCTGAAAGGAATGTGCTGATCTTTGACTTAGG
AGGTGGCACTTTTGATGTGTCAATCCTTACTATTGAAGATGGGATCTTTGAGGTTAAATC
CACAGCTGGAGACACCCATTTAGGTGGAGAAGACTTTGACAACCAAATGGTCAACCATTT
TATTGCAGAGTTCAAGTGCAAACATAAGAAAGATATCAGTGAAAACAAGAGGGCAGTTCG
TCGTCTACGTACTGCTTGTGAACGCGCTAAGCATACACTTTCTTCTAGCACCCAGGCCAG
TATTGAGATTGATTCTCTGTATGAAGGAATCGACTTCTATACCTCTATTACTCGTGCCCA
GTTTGAAGAATTAAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCTCT
TCGGGATGCCAAGTTAGACAAGTCTCAGATCTGCAATATTGTTCTGGTGGGTGGTTCTAC
CTGTATCCCCAAGATTCAGAAACTTCTCCAAGACTTCTTCAGTGGAAAAGAACTGAATAA
GAGCATCAACCCTGATGAAGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATCCTTTC
TGGAGACAAATCTGAAAATGTTCAAGATTTGCTGCTGTTGGATGTCACTCCACTTTCTCT
TGGCATTGAAACTGCTAGAGGAGTCATGACTGTTCTTATCAAGCGGAATACTACCATTCC
TACCAAACAGACACAGATCTTCACTACCTACTCCGACAACCAGCCTGGTGTGCTTATACA
GGTGTATGAAGGTGAGTGTGCCATGACCAAGGACAACAATCTACTTGGAAAGTTTGAACT
CACAGGCATACCTCCTGCTCTTCGTGGTGTCCCTCAGATTGAGGTCACTTTCGATATTGA
TGTTATAGTATCCTCAATGTCTCTGCCGTGGATAAGAGCACAGGAAAAGAGAACAAGATT
ACTATCAATAATGACAAGGGCCACTTGAGCAAGGAAGATATTGAGCGCATGGTCCAGGAA
GCTGAGAAGTACAAAGCTGAAGATGAGAAACAGCGGGACAAGGTGTCTTCCAAGAATTCA
CTGGAGTCTTACGCATTCAACATGAAAGCAACTGTTGAAGATGAAAAACTTCAGGGCAAG
ATAAATGATGAAGACAAACAGAAGATTCTTGACAAATGCAATGAAATCATCAACTGGCTT
GAGAAGAACCAGACTGCAGAGAAGGAAGAATTTGAACACCAGCAGAAAGAGTTGGAGAAA
GTCATCATCACCAAGCAGTACCAGAGTGCAGGGGGCATACCAGGAGGAATGCCTGGAGAC
TTCCCTGGCGGTGGAGCTCCTCCCTCTGGTGGTGCCTCCTCTGGGCCCACCATTGGAGAG
GTTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGR
MSKGPAVGI.LGTTYSC.GVFQH.KVEIIANDQGNRTTPSYVAFTDTE.LIGDAAKNQVAMNPTNTVFDAKRLIG.RFDDAVVQSD.KHWPFMVVNDAGR
Retrocopy
MSKGPAVGIYLGTTYSCMGVFQHRKVEIIANDQGNRTTPSYVAFTDTEQLIGDAAKNQVAMNPTNTVFDAKRLIGWRFDDAVVQSDIKHWPFMVVNDAGR


Parental protein
PKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYL-GKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFD
PKVQVEYKGETK.FYPEEVSSMVLTKMKEIAEAYL.G..VTNAVVTVPAYFNDSQ.QATKDAGTIAGL.VLRIINEPTAAAIAYGLDKKVGAERNVLIFD
Retrocopy
PKVQVEYKGETKRFYPEEVSSMVLTKMKEIAEAYL\GR-VTNAVVTVPAYFNDSQHQATKDAGTIAGLSVLRIINEPTAAAIAYGLDKKVGAERNVLIFD


Parental protein
LGGGTFDVSILTIEDGIFEVKSTAGDSHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKCTLSSSTQASIEIDSLYEGIDFYTSITR
LGGGTFDVSILTIEDGIFEVKSTAGD.HLGGEDFDN.MVNHFIAEFK.KHKKDISENKRAVRRLRTACERAK.TLSSSTQASIEIDSLYEGIDFYTSITR
Retrocopy
LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNQMVNHFIAEFKCKHKKDISENKRAVRRLRTACERAKHTLSSSTQASIEIDSLYEGIDFYTSITR


Parental protein
ARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPL
A.FEELNADLFRGTLDPVEKALRDAKLDKSQI..IVLVGGST.IPKIQKLLQDFF.GKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPL
Retrocopy
AQFEELNADLFRGTLDPVEKALRDAKLDKSQICNIVLVGGSTCIPKIQKLLQDFFSGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPL


Parental protein
SLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDID-ANGILNVSAVDKSTGKE
SLGIETA.GVMTVLIKRNTTIPTKQTQ.FTTYSDNQPGVLIQVYEGE.AMTKDNNLLGKFELTGIPPA.RGVPQIEVTFDID....ILNVSAVDKSTGKE
Retrocopy
SLGIETARGVMTVLIKRNTTIPTKQTQIFTTYSDNQPGVLIQVYEGECAMTKDNNLLGKFELTGIPPALRGVPQIEVTFDID/CYSILNVSAVDKSTGKE


Parental protein
NKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKE
NKITI.NDKG.LSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWL.KNQTAEKEEFEHQQKE
Retrocopy
NKITINNDKGHLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLEKNQTAEKEEFEHQQKE


Parental protein
LEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD
LEKV...IITK.YQSAGG.PGGMPG.FPGGGAPPSGGASSGPTI.EVD
Retrocopy
LEKV---IITKQYQSAGGIPGGMPGDFPGGGAPPSGGASSGPTIGEVD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide