RetrogeneDB ID:
retro_mputfur_629
Organism:
Location:
GL896927.1:12871575-12871997 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.33 %
Coverage:
54.41 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
PCNA
Parental gene aliases:
No gene alias available
Parental gene description:
proliferating cell nuclear antigen [Source:HGNC Symbol;Acc:8729]

Genomic region (view in browser)





>retro_mputfur_629
GCAGTCAGTGAAGACATCATTATACTAAGGGCCAAAGATAATGCGGACATCATGGCTGTA
GTATTTGAAGCAACAAATCAAGAGAAGTTTTCAGACTATGAAATTAAGGTTGTAGATTTA
GATGTTGAACAACCTGGAATTTCAGAACAAGAGTATAGCTGTGTAGTAAAGATGCCTTCC
AATGAATTTGCATGTATATGCTGACATCTCAGTCATACTGGAGATGCTGTTTATTTTCCT
GTGCAGGAGACAGAGGGAAATTTTACACCAGTGGAGAACTAGAAAATAGAAATATTAAGT
TGTCGTGAACAAGTAATGTAGGTAAAAAGGAGAAACCTGTTGCCATTGAGATGAATGAGC
CAGTTCCACTAACTTTTGCACTGAGTTACCTGAAATTTACAAAAGCTGATCTCCTCTCTC
CT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAV-VISCAKDGVKFSASGELGNGNI
A..EDII.LRA.DNAD..A.VFEA.NQEK.SDYE.K..DLDVEQ.GI.EQEYSCVVKMPS.EFA.IC..LSH.GDAV...SCA.D..KF..SGEL.N.NI
Retrocopy
AVSEDIIILRAKDNADIMAVVFEATNQEKFSDYEIKVVDLDVEQPGISEQEYSCVVKMPSNEFACIC*HLSHTGDAV/LFSCAGDRGKFYTSGELENRNI


Parental protein
KLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSP
KLS.TSNV.K.E..V.IEMNEPV.LTFAL.YL..FTKA..LSP
Retrocopy
KLS*TSNVGKKEKPVAIEMNEPVPLTFALSYLK-FTKADLLSP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide