RetrogeneDB ID:
retro_mputfur_63
Organism:
Location:
GL896898.1:36829469-36830267 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.0 %
Coverage:
99.2 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
TAF9B
Parental gene aliases:
No gene alias available
Parental gene description:
TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:17306]

Genomic region (view in browser)





>retro_mputfur_63
ATGGAGTCTGGCAAGATGGCTTCTCCCAAGAGCATGCCGAAAGATGCACAGATGATGGCA
CAAATCCTGAAGGATATGGGGATTACAGAATATGAGCCAAGAGTTATAAATCAGATGTTG
GAGTTTGCCTTCCGATATGTGACCACAATTCTAGATGATGCAAAAATTTATTCCAGCCAT
GCTAAGAAAGCTACTGTTGATGCAGATGATGTGCGATTGGCCATCCAGTGTCGTGCTGAT
CAGTCTTTTACCTCTCCTCCCCCAAGAGATTTTTTATTAGATATTGCAAGGCAAAGAAAT
CAAACTCCTTTGCCATTAATCAAGCCATATTCAGGCCCCAGGTTGCCACCTGATAGATAC
TGCTTGACTGCTCCAAACTATAGACTTAAGTCTTTACAAAAAAAGGCATCTACCTCTGCG
GGAAGAATAACAGTTCCACGGTTAAGTGTTGGTTCAGTTACTAGCAGACCAAGTACTCCC
ACTCTTGGCACACCAACCCCACAGACCATGTCTGTGTCAACTAAAGTAGGGACTCCAATG
TCCCTCACAGGGCAAAGGTTTACAGTACAGATGCCCACTTCACAGTCCCCAACTGTAAAA
GCATCAATTCCTGCAACATCCGCAGTTCAGAATGTTCTGATTAATCCATCATTAATTGGG
TCCAAAAACATTCTTATTACCACTAACATGGTGTCATCACAAAATACTGCCAATGAATCA
TCAAATGCAATGAAAAGAAAACGAGAAGATGATGATGATGACGATGATGATGATGATGAT
GACTATGATAATTTGTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKN
MESGKMA.PK..P.DA..MAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKK..VDADDVRLAIQCRADQSFTSPPPRDFLLDIARQ.N
Retrocopy
MESGKMASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRN


Parental protein
QTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKK-GPNQGRL-VPRLSVGAVSSRPSTPTVA--TPQTASVPNKAVPPVSVTSQRYTVQIPPSQSTPVK
QTPLPLIKPY.GPRLPPDRYCLTAPNYRLKSL.KK.....GR..VPRLSVG.V.SRPSTPT....TPQT.SV..K...P.S.T.QR.TVQ.P.SQS..VK
Retrocopy
QTPLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPMSLTGQRFTVQMPTSQSPTVK


Parental protein
-SVPATTAVQNVLINPSIIGPKNILI-TNMVSSQNMPNE-SNPLKRKHEDDDDND
.S.PAT.AVQNVLINPS.IG.KNILI.TNMVSSQN..NE.SN..KRK.EDDDD.D
Retrocopy
ASIPATSAVQNVLINPSLIGSKNILITTNMVSSQNTANESSNAMKRKREDDDDDD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide