RetrogeneDB ID:
retro_mputfur_635
Organism:
Location:
GL896928.1:14255634-14255951 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.48 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
RPLP1
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372]

Genomic region (view in browser)





>retro_mputfur_635
ATGGCCTTTGTCTTAGAGCTCCCCTGCATCTACTCAGCCCTCATCCTGCAGGATGAAGTA
CTGGTCACAGAGATGAAGATCAATGCCTCACTAAAGCAGCCAGTGTAAATGTTGAACCTT
TCTGGCCACATTTGTTTGCAAAGGGCCTGGCCCATGTGAACATCAGGAGGTTCATCTGCA
ATGTAGGGAGTGGTGGACCTTCCCCAGCAGGAGGTCCTGCTCCCTCCACCATTGCTGCCC
CAGCTGAGAAGAAAGTGGAAGCCAAGAAAGCAGAATCAGAAGAGTCTGCTGATGACACAG
GATTTGGACTTTCTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MASVSELACIYSALILHDDEVTVTEDKINA-LIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKE
MA.V.EL.CIYSALIL.D.EV.VTE.KINA.L.KAA.VNVEPFWP.LFAK.LA.VNI...ICNVG.GGP.PA.G.AP....AP..A....E.KK.E...E
Retrocopy
MAFVLELPCIYSALILQD-EVLVTEMKINA/LTKAASVNVEPFWPHLFAKGLAHVNIRRFICNVGSGGPSPAGGPAPSTIAAP--AEKKVEAKKAES--E


Parental protein
ESEESDDDMGFGLFD
ES.....D.GFGL.D
Retrocopy
ESAD---DTGFGLSD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide