RetrogeneDB ID:
retro_mputfur_64
Organism:
Location:
GL897043.1:5338751-5339615 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.12 %
Coverage:
83.2 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
FAM122B
Parental gene aliases:
No gene alias available
Parental gene description:
family with sequence similarity 122B [Source:HGNC Symbol;Acc:30490]

Genomic region (view in browser)





>retro_mputfur_64
ATGGCTCAGGAGAAGATGGAGCTAGACCTGGAGTTGCCTCCGGGTACTGGCGGGAGCCCG
GCGGAGGGCGGCGGCAGTGGCGCCGGCGGGGGCCTCAGGAGGTCTAACAGCGCCCCCCTG
ATCCACGGCCTCAGTGACACTTCGCCGGTGTTCCAGGCCGAGGCGCCGAGCGCCAGGCGG
AACAGCACAACGTTCCAGAACCGCCACGGCCTGCTCCTGCCGGCCTCCCCCGTCCGCATG
CACAGCAGCCGCTTGCACCAGATCAAGCAGGAGGAAGGCATGGACTTGATCAACCGAGAG
ACCGTCCACGAGCGCGAGGTGCAGAACGCAATGCAGATAAGCCACTCCTGGGAGGAAAGT
TTCAGCCTGAGTGACAACGACGTGGAGAAGTCCGCCTCCCCGAAGCGCATCGATTTCATT
CCGGTGTCCCCAGCGCCGTCGCCCACCCGGGGGATCGGGAAGCAGTGTTTTTCACCCTCC
TTGCAAAGTTTTGTGAGTAGCAACGGATTGCCTCCGAGCCCCATTCCCAGCCCAACGACT
CGATTTACTACCCGGAGAAGCCAGAGTCCCATCAATTGCATTAGACCAAGTGTTCTTGGA
CCATTGAAAAGAAAATGTGAAATGGAAACTGAGTATCAGCCAAAGAGATTTTTCCAGGGC
ATCACCAACATGCTTTCTTCTGACGTTGCACAGCTGTCAGATCCTGGCGTGTGTGTATCG
TCCGATACCCTCGACGGAAACAGCAGCAGTGCGGGATCGTCGTGTAACTCACCAGCGAAA
GTCAGCACTACCACCGACTCTCCTGTGTCGCCTGCCCAAGCGGCCTCTCCATTTATTCCA
GTAGATGAACTTTCATCTAAGTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GGTLRRSSSAPLIHGLSDLSQVFQPYTFRTRRNSTTIMSRHSLLLSSSPNRVPSSRLHQIKREEGMDMMNRETAHEREVQTAMQISQSWDESLSLSDSDF
GG.LRRS.SAPLIHGLSD.S.VFQ......RRNSTT...RH.LLL..SP.R..SSRLHQIK.EEGMD..NRET.HEREVQ.AMQIS.SW.ES.SLSD.D.
Retrocopy
GGGLRRSNSAPLIHGLSDTSPVFQAEAPSARRNSTTFQNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEESFSLSDNDV


Parental protein
EKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCFSPSLQMFVSSSGLPPSPVPSP-RRFTSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTSML
EK.....SPKRIDF.PVSPAPSPTRG.GKQCFSPSLQ.FVSS.GLPPSP.PSP..RFT.RRSQSP..CIRPSVLGPLKRK.EMETE.QPKR.FQG.T.ML
Retrocopy
EKSA---SPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTTRFTTRRSQSPINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNML


Parental protein
SPEAAQLSD
S...AQLSD
Retrocopy
SSDVAQLSD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide