RetrogeneDB ID:
retro_mputfur_641
Organism:
Location:
GL896930.1:5028941-5029270 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.49 %
Coverage:
93.16 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
SMIM14
Parental gene aliases:
No gene alias available
Parental gene description:
small integral membrane protein 14 [Source:HGNC Symbol;Acc:27321]

Genomic region (view in browser)





>retro_mputfur_641
AACAGTCCAGTTAAATCAAGCTGGGCAATCATGGCAGAAGGAGGATTCGATCCCTGGGAA
TGTGTTTCCTCTCATGAACATGCAGTGAGAAGGCTGATCAATCTGTTGAGACAGTCCCAG
TCCTACTGCACAGACACAGAATGTCTTCAGGAATTACCAGGCCTCTCTGGTGATAATGGT
ATCAGTATCATCTTGATCTTCATGGCCTGGATGGTTATTGCAGTGATCTCGGGTTCCTAC
TGAGACCTACTCACCTAAGAGGATCCAACCTAACTGGCAAGCCAACCAGTCCTCATAATG
GACAAGATCCACCAGCCCCTCCTGTGGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NSRVKSSWAIMAEGGFDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLQELPGPSGDNGISITMILMAWMVIAVI-LFLLRPP-NLRGSNLTGKPTSPH
NS.VKSSWAIMAEGGFDP.ECV.SHEHA.RRLINLLRQSQSYCTDTECLQELPG.SGDNGISI..I.MAWMVIAVI.L..L..P..LRGSNLTGKPTSPH
Retrocopy
NSPVKSSWAIMAEGGFDPWECVSSHEHAVRRLINLLRQSQSYCTDTECLQELPGLSGDNGISIILIFMAWMVIAVI/LGFLLRPTHLRGSNLTGKPTSPH


Parental protein
NGQDPPAPPVD
NGQDPPAPPVD
Retrocopy
NGQDPPAPPVD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide