RetrogeneDB ID:
retro_mputfur_642
Organism:
Location:
GL896930.1:7372364-7372779 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
66.67 %
Coverage:
89.17 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
PIGP
Parental gene aliases:
No gene alias available
Parental gene description:
phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:3046]

Genomic region (view in browser)





>retro_mputfur_642
TTGTCTAAAGCCACAGGGAAAATGGCGGAAAATTTACCATCACCATTGCCAGAAAAAACA
ATTTATGGCTTTGTTCTTTTCTTAAGCTCCCAATCTGGCTACATACTATATCTCATGGGG
GCTTTTACTCCTGAATCTTGATTAAACTCCATAGGCTAAATCTATTAGCCTCAAAAATAT
TGGGTAGTTGCCATGGCTTATCTACCTCTTCATTACTACAGTAATTGGTTTTGTCCTATC
ATTTGAAATAAGCAGGATGAATACAACCACACTCATCTTCATTCATATAATCACAGATAA
CTATGCTAATAATCAGAAGAAATACCAAGAAGAGACCATCCCAGCTTTAAGAGATTGTCC
CATTAGTGAAGTAAACCAAAAGGTCTTTCTGGTGGTCAAAGAACTTTACACAAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LSKATGKMVENSPSPLPERAIYGFVLFLSSQFGFLLYLVWAFIPESWLHSLGLTYWPQKYWAVALP-VYLLITIVIGYVLLFGINMMSTSPLNSIHTITD
LSKATGKM.EN.PSPLPE..IYGFVLFLSSQ.G..LYL..AF.PES.L.S.G..Y.PQKYW.VA....YL.IT.VIG.VL.F.I..M.T..L..IH.ITD
Retrocopy
LSKATGKMAENLPSPLPEKTIYGFVLFLSSQSGYILYLMGAFTPES*LNSIG*IY*PQKYWVVAMA\IYLFITTVIGFVLSFEISRMNTTTLIFIHIITD


Parental protein
DYAKNQRQKKYREEAIPALRDIPISEVNQMFFLATKEPYAK
.YA.N..QKKY.EE.IPALRD.PISEVNQ..FL..KE.Y.K
Retrocopy
NYANN--QKKYQEETIPALRDCPISEVNQKVFLVVKELYTK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide