RetrogeneDB ID:
retro_mputfur_643
Organism:
Location:
GL896930.1:11228928-11229357 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
59.46 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
5


Parental gene:
Parental gene symbol:
Rpl26
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]

Genomic region (view in browser)





>retro_mputfur_643
ATGATGTTCATTCCCTTTATGACTTCTGACTTCAGTGATAACCGTGAAAGGCATTTCAGG
GCACCTTCCCACATTTGCAGGAAGGTTAGGTCTTCCCTCCTAAAAAGTTGAGACAAAAGT
ACGATGTGCAATCTGTGCCCATCTGAAAGGAGCATGAAGGACAGATTGTGTGAGGACACT
TCAAAGGTCAGCCGACCGGCAAAGTCATCCACGTCTACAGGAGGAAATACGCCATCTACA
CTGAATGAGTGCAGCGAGAAGAGGTGGAGGGCACACCTGTCCACGTGGGCATTCCCTCTA
GCAAGGTGCTTATCACTAGACTGAAGCTGGACAGACAGTAAAAAGGTTCTTGAATGTAAA
GCCAAATCTCAGCAAGTAGGGAAGGAAAAGGGCAAATAAAAGGTAGAAGGAATTGAGGAG
GTACAGGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSS-PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGI
M.F.PF.TSD.S.NR.RHF.APSHI.RK..SS.P..K.LRQKY.V.S.PI.K..E.Q.V.GH.KGQ..GKV..VYR.KY.IY.E.VQRE...GT.VHVGI
Retrocopy
MMFIPFMTSDFSDNRERHFRAPSHICRKVRSS/PPKK-LRQKYDVQSVPI*KEHEGQIV*GHFKGQPTGKVIHVYRRKYAIYTE*VQREEVEGTPVHVGI


Parental protein
HPSKVVITRLKLDKD-RKKILERKAKSRQVGK-EKGKYKEETIEKMQE
..SKV.ITRLKLD....K..L..K......G..EKGK.K.E.IE..QE
Retrocopy
PSSKVLITRLKLDRQ/VKRFLNVKPNLSK*GR/EKGK*KVEGIEEVQE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide