RetrogeneDB ID:
retro_mputfur_644
Organism:
Location:
GL896930.1:11601596-11602757 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
76.74 %
Coverage:
98.47 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
IDH3G
Parental gene aliases:
No gene alias available
Parental gene description:
isocitrate dehydrogenase 3 (NAD+) gamma [Source:HGNC Symbol;Acc:5386]

Genomic region (view in browser)





>retro_mputfur_644
ATCGCATTGAAGATGCTGCCAGCTGCCATTTGCTCTGTGAAGTCCATGTTGCGACCTTCT
ACTCTCTGCCATTCTCGGGAGGTTTTATTTGCCCGTGAGATCTCACTGAGGAGCTTCTCT
TTCAAACGCAGTATTCTTCCATTGGCCAAGTATGGTGGGCGACACACTGTGACTCTGATT
CCCGGGGATGGCATTGGACCTGAACTTGTGTTGCATGTCAAGACTGTATTCAGACATGCA
CGTGTGCCTGTGGACTTTGAGGAGGTAACGGTTAACTCCACTTCTAGTGAAGAGGACATT
CACAATGCCATCATGGCAGTCAGCCGAAACCGTGTGGCTTTGAAGGGCAACATCGAAACT
GACCACAACCTGCCCCCATCTCACAAGTCCCGTAACAACTTGTTTCGCACCACTCTTGAT
CTCTATGCCAACGTCATCCATTTTAAAAGTCTGCCAGGCGTGGAGACCCGGCACAAGGAC
ATAGACATCTTAGTTGCTCGGGAAAACACAGAGGGTGAATACAGCAACCTAGAGCATGAG
AGTGTGAAGGGAGTGATTGAGAGCCTCAAGATCATTACCAAGGCCAAGTCTTTGCGCATT
GCTGAATATGCCTTCCAGCTGGCCCAAGAAATGGGACGCAAGAAAGTGACGGCCGTGCAC
AAGGCCAACATCATGAAACTGGGAGATGGTCTTTTCCTCCAGTGTTGTAAGGAAGTGGCC
TCCTGCTATCCTCAGCTGACCTTCGAGGGCATGATCGTGGATCACACCACCACGCAGCTG
GTATCCCGGCCCCAGCAGTTTGATGTCATGGTGATGCCCAATCTTTATGGCAATGTTGTC
AACAATGTCTGCACAGGGTTGGTTGGGGGAGCAGGCCTTGTGCCTGGTGCGAACTATGGC
CATGTGTGCGCAGTGTTTGAAACAGCATCAAGGCAGGTGGGCAGACATTTAGCCAATAAG
AATATTGCCAACCCAACTGCCATGCTGCTCGCAAGCTGTATTATGCTGGATTACCTCAAG
CTCCACTCCTATGCCACCTCCATTCGCACTGCAGTCTTGGCATCCTTGGAGAACAGAAAT
GTCCACACTCCAGACATTGGAGGCCAGAGTACCACATTGGACATTATTCAAGACATAATA
AACCACATCAGTACTGTCAGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MALKVAAVVGGAAKAVLRPALLCRPWEVLSAHEAPRRSIS-QQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVSSSADEEDV
.ALK.........K..LRP..LC...EVL.A.E...RS.S....I.P.AKYGGRHTVT.IPGDGIGPEL.LHVK.VFRHA.VPVDFEEV.V.S...EED.
Retrocopy
IALKMLPAAICSVKSMLRPSTLCHSREVLFAREISLRSFSFKRSILPLAKYGGRHTVTLIPGDGIGPELVLHVKTVFRHARVPVDFEEVTVNSTSSEEDI


Parental protein
RNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRI
.NAIMA..RNRVALKGNIET.HNLPPSHKSRNN..RT.LDLYANVIH.KSLPGV.TRH.DIDIL..RENTEGEYS.LEHESV.GV.ESLKIITKAKSLRI
Retrocopy
HNAIMAVSRNRVALKGNIETDHNLPPSHKSRNNLFRTTLDLYANVIHFKSLPGVETRHKDIDILVARENTEGEYSNLEHESVKGVIESLKIITKAKSLRI


Parental protein
AEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCKEVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG
AEYAF.LAQE.GRKKVTAVHKANIMKLGDGLFLQCCKEVA..YPQ.TFE.MIVD.TT.QLVSRPQQFDVMVMPNLYGN.VNNVC.GLVGG.GLV.GANYG
Retrocopy
AEYAFQLAQEMGRKKVTAVHKANIMKLGDGLFLQCCKEVASCYPQLTFEGMIVDHTTTQLVSRPQQFDVMVMPNLYGNVVNNVCTGLVGGAGLVPGANYG


Parental protein
HVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHIRIIN
HV.AVFETA.R..G...ANKNIANPTA.LLASC.MLD.LKLHSYATSIR.AVLAS..N.N.HTPDIGGQ.TT...IQDII.HI....
Retrocopy
HVCAVFETASRQVGRHLANKNIANPTAMLLASCIMLDYLKLHSYATSIRTAVLASLENRNVHTPDIGGQSTTLDIIQDIINHISTVS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide