RetrogeneDB ID:
retro_mputfur_646
Organism:
Location:
GL896930.1:12141794-12143441 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.66 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
UTP18
Parental gene aliases:
No gene alias available
Parental gene description:
UTP18 small subunit (SSU) processome component homolog (yeast) [Source:HGNC Symbol;Acc:24274]

Genomic region (view in browser)





>retro_mputfur_646
ATGCCGCCAGAACGTAGAAGCCGAACGAAACCGGACCGGAGACCCGGAGTGAGTCTGGAC
CGGAAGAGCCGAACGAAGCCGGGCCGGAGAGCCGGAGCAGGGCCCCGCGGGCCGCCCCGA
AAGGCTGCTCCTTCATCCCAGCGGAAACCGCCGGCCCGGCCGAGCGCAGCGGTCGCTGCG
ATCGCAGTCGCGGCGGAGGAGGAGAGACGCCTCCGGCAGCGGAACCGCCTGACGCTGGAG
CAGGACAAACCGGCCGTGGAACGGTGCCTCGAGGAGCTGGTGTTCGGCGACGTCGAGGAC
AACGAGGACGCGTTGTTGCGGCGTCTGCAGGGCTCGCGGGTTCAAGTGCAGGAAGACTCC
GGTGACTCAGAAGCAAAAGATAATTTTCTGTTTCAAAAGAAGCCAGTTTGGGTGGATGAA
GAAGATGAAAATGATGAAATGGTTGACATGATGAGCAATCGGTTCCGGAAAGATATGATG
AAAAATGCCAGTGAAAGTAAACTTTCAAAAGACAAGCTTCAAAAAAGACTTAAGGAAGAA
TTCCAGCATGCCATGGGGGGTGTACCTGCCTGGGCAGAGACTAGTAAGTGGAAGACATCT
TCAGATGGTGAAAGTGAAGAGGATAAAGATGATTTGTTGCAAAGGACTGGGAATTTCATA
TCTACATCAGCTTCTCTTCCTAAAGGAATCTTAAAGAATTGTCTCCATGCTAACGCGGAA
CGTCCTACCACGGCTCGGATCTCATCCGTGCAGTTCCATCCTTGTGCGCAAGTTGTAATG
GTTGCCGCGCGAGATAATGCCGTGTCGCTGTTTCAGGTTGATGGAAAAACAAATCCTAAA
ATCCAGAGCATCTATTTGGAGAAGTTTCCAATATTTAAGGCCTGTTTTAGTGCTACTGGA
GAAGAGGTTTTAGCCACGAGCATCCACAGCAAGGTTCTTTATGTCTATGATATGCTGGCT
GGAAAGCTAATTCCTGTGCATCAAGTGAGAGGTTTGAAAGAGAAGATAGTTAGGAGCTTC
GAAGTGTCTCCAGATGGGTCCTTCTTGCTGATAAATGGTGTTGCTGGATATCTTCATTTG
CTGTCAATGAAGACCAAAGAACTGATTGGTAGCATGAAAATTAATGGAAGGGTTGCAGCA
TCCACGTTCTCTTCAGATAGCAAGAAACTATAGGCCTCTTCAGGCGATGGGGAAGTTTAT
GTTTGGGATGTGAACTCCAGAAAATGCCTTAACAGATTTGTTGATGAAGGCAGTTTATAT
GGATTAAGCATTGCCACATCTAGGAATGGACAGTATGTGGCTTGTGGTTCTAATTGTGGA
GTGGTAAACATATACAATCAAGATTCTTGTCTTCAAGAAACAAATCCAAAGCCGATAAAA
GCTATAATGAACTTGGTTACAGGTGTTACTTCTCTGAGCTTCAATCCTACTACAGAAATC
TTGGCAATTGCTTCAGAAGAAATGAAAGAAGCGGTCAGATTGGTTCACCTTCCCTCCTGT
ACAGTATTTTCAAACTTCCCAGTCATTAAAAAGAAGACTGTTTCTCTTGTTCATACCATG
GATTTTTCTCCCAGAAGTGGGTATTTTGCCTTGGGGAATGAAAAGGGCAAGGCCCTGCTC
TATAGGTTGCACCATTACTCAGAATTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPPERRSRTKPDRRPGVSLDRKSRTKPGRRAGAGPGGPPRKAAPSSQRKPPARPSAAAAAIAVAAEEERRLRQRNRLTLEEDKPAVERCLEELVFGDVED
MPPERRSRTKPDRRPGVSLDRKSRTKPGRRAGAGP.GPPRKAAPSSQRKPPARPSAA.AAIAVAAEEERRLRQRNRLTLE.DKPAVERCLEELVFGDVED
Retrocopy
MPPERRSRTKPDRRPGVSLDRKSRTKPGRRAGAGPRGPPRKAAPSSQRKPPARPSAAVAAIAVAAEEERRLRQRNRLTLEQDKPAVERCLEELVFGDVED


Parental protein
NEDALLRRLQGSRVQVQEDSGDSEVENEAKDNFLFQKKPVWVDEEDENDEMVDMMSNRFRKDMMKNASESKLSKDKLQKRLKEEFQHAMGGVPAWAETSK
NEDALLRRLQGSRVQVQEDSGDS....EAKDNFLFQKKPVWVDEEDENDEMVDMMSNRFRKDMMKNASESKLSKDKLQKRLKEEFQHAMGGVPAWAETSK
Retrocopy
NEDALLRRLQGSRVQVQEDSGDS----EAKDNFLFQKKPVWVDEEDENDEMVDMMSNRFRKDMMKNASESKLSKDKLQKRLKEEFQHAMGGVPAWAETSK


Parental protein
RKTSSDGESEEDEDDLLQRTGNFISTSASLPKGILKVKNCLHANAERPTTARISSVQFHPCAQVVMVAARDNAVSLFQVDGKTNPKIQSIYLEKFPIFKA
.KTSSDGESEED.DDLLQRTGNFISTSASLPKGIL..KNCLHANAERPTTARISSVQFHPCAQVVMVAARDNAVSLFQVDGKTNPKIQSIYLEKFPIFKA
Retrocopy
WKTSSDGESEEDKDDLLQRTGNFISTSASLPKGIL--KNCLHANAERPTTARISSVQFHPCAQVVMVAARDNAVSLFQVDGKTNPKIQSIYLEKFPIFKA


Parental protein
CFSATGEEVLATSIHSKVLYVYDMLAGKLIPVHQVRGLKEKIVRSFEVSPDGSFLLINGVAGYLHLLSMKTKELIGSMKINGRVAASTFSSDSKKLYASS
CFSATGEEVLATSIHSKVLYVYDMLAGKLIPVHQVRGLKEKIVRSFEVSPDGSFLLINGVAGYLHLLSMKTKELIGSMKINGRVAASTFSSDSKKL.ASS
Retrocopy
CFSATGEEVLATSIHSKVLYVYDMLAGKLIPVHQVRGLKEKIVRSFEVSPDGSFLLINGVAGYLHLLSMKTKELIGSMKINGRVAASTFSSDSKKL*ASS


Parental protein
GDGEVYVWDVNSRKCLNRFVDEGSLYGLSIATSRNGQYVACGSNCGVVNIYNQDSCLQETNPKPVKAIMNLVTGVTSLSFNPTTEILAIASEEMKEAVRL
GDGEVYVWDVNSRKCLNRFVDEGSLYGLSIATSRNGQYVACGSNCGVVNIYNQDSCLQETNPKP.KAIMNLVTGVTSLSFNPTTEILAIASEEMKEAVRL
Retrocopy
GDGEVYVWDVNSRKCLNRFVDEGSLYGLSIATSRNGQYVACGSNCGVVNIYNQDSCLQETNPKPIKAIMNLVTGVTSLSFNPTTEILAIASEEMKEAVRL


Parental protein
VHLPSCTVFSNFPVIKKKTVSLVHTMDFSPRSGYFALGNEKGKALLYRLHHYSEF
VHLPSCTVFSNFPVIKKKTVSLVHTMDFSPRSGYFALGNEKGKALLYRLHHYSEF
Retrocopy
VHLPSCTVFSNFPVIKKKTVSLVHTMDFSPRSGYFALGNEKGKALLYRLHHYSEF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide