RetrogeneDB ID:
retro_mputfur_648
Organism:
Location:
GL896931.1:7045243-7045947 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.31 %
Coverage:
55.42 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
SF3B4
Parental gene aliases:
No gene alias available
Parental gene description:
splicing factor 3b, subunit 4, 49kDa [Source:HGNC Symbol;Acc:10771]

Genomic region (view in browser)





>retro_mputfur_648
ATGGTGGCCGGGCCGATCTCCAAGCGGAACCAGGATGCCACTGTCTATGTCGGGGGCCTG
GACGAGAAGGTTAGCGAACCGCTGCTGTGGGAGCTATTTCTCCAGGCAGGGCCGGTAGTC
AACACCCACATGCCAAAAGATAGAGTCACAGGTCAGCACCAAGGGTATGGCTTTGTGGAA
TTCTTGAGTGAGGAAATGCTGACTATGCCATTAAGATCATGAACATGATCAAACTCTATG
GGAAACCAATACGGGTGAACAAGGCATCAGCTCACAACAAGAACCTGGACGTGGGAGCCA
ACATTTTCATTGGCAATCTGGACCCGGAGATTGATGAGAAGCTGCTTTATGATACTTTCA
GCGCTTTTGGGGTCATCTTACAAACCCCGAAGATTATGCGGGACCCTGACACAGGCAACT
CCAAAGGTTATGCCTTTATTAATTTTGCCTCATTTGATGCTTCGGATGCAGCTATTGAGG
CTATGAATGGGCAGTATCTCTGTAACCGCCCTATCACTGTGTCCTATGCCTTCAAGAAGG
ACTCCAAGGGTGAGCGCCATGGCTCAGCAGCTGAACGACTTCTGGCAGCCCAGAACCCAC
TCTCCCAGGCTGACCGTCCTCATCAGCTGTTTGCAGATGCACCCCCTCCGCCCTCAGCCC
CCAATCCTGTGGTATCATCATTGGGGTCTGGGCTTCCTCCTCCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE-DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG
M.AGPIS.RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE..ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG
Retrocopy
MVAGPISKRNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE/NADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG


Parental protein
ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQN
ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQN
Retrocopy
ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQN


Parental protein
PLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPP
PLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPP
Retrocopy
PLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide