RetrogeneDB ID:
retro_mputfur_650
Organism:
Location:
GL896931.1:4892740-4893321 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.15 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
RHOA
Parental gene aliases:
No gene alias available
Parental gene description:
ras homolog family member A [Source:HGNC Symbol;Acc:667]

Genomic region (view in browser)





>retro_mputfur_650
ATGGCTGACATCCGGAAGAAACTGGTGATTGTTGGTGATGGAGGCTGTGGCAAGACTTGT
TTGCTCATCGTCTTTAGCAAGGACCTGTTCCCAGAGGGGTATGTACCCACAGTGTTTGAG
AACTATGTGGCAGATATGGAAGTTGATGGAAAGCAGGTAGAGTTGGCTTTGTGGGATACA
GCTGGGCAGGAAGATTATGACCGCTTGAGGCCTCTCTCCTATCCGGACACTGATGTTATA
CTGATGTGTTTCTCCATTGACAGCCCTGATAGTTTAGAAAATATCCCAGAAAAAAATGGA
CCCCGGAAGTCAAGCACTTCTGTCCCAACGTGCCCATCATCCTGGTTGGGAACAAGAAGG
ATCTTCGGAATGGTGAGCACGCAAGGCGGGAACGAGCCAAGATGAAGCAGGAGTTGGTGA
AACCTGAAGAAGGCAGAGATATGGCAAACAGGATTGGTGCTTTTGGGTACCTGGAGTGTT
CAGCAAAGACCAAAGATGGAGTGAGGGAGGTTTTTGAAATGGCCAGGAGAGCTGCTCTGC
AAGCCAGACGTGGGAAGAAAAAATCTGGGTGCCTTGTCTTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
MA.IRKKLVIVGDG.CGKTCLLIVFSKD.FPE.YVPTVFENYVAD.EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK..
Retrocopy
MADIRKKLVIVGDGGCGKTCLLIVFSKDLFPEGYVPTVFENYVADMEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKNG


Parental protein
P-EVKHFCPNVPIILVG-NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLVL
P.......P..P....G.NKKDLRN.EH.RRE.AKMKQE.VKPEEGRDMANRIGAFGY.ECSAKTKDGVREVFEMA.RAALQARRGKKKSGCLVL
Retrocopy
PRKSSTSVPTCPSSWLG/NKKDLRNGEHARRERAKMKQELVKPEEGRDMANRIGAFGYLECSAKTKDGVREVFEMARRAALQARRGKKKSGCLVL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide