RetrogeneDB ID:
retro_mputfur_651
Organism:
Location:
GL896931.1:10739073-10739599 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.04 %
Coverage:
94.3 %
Frameshifts:
2
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_651
AGGAGGTCAACTTGCAACTTTCTTTAGTTATCCTGCATCCAGGTTCATCCCACGCCAGCT
GTGCCTGCCATGCCACCCACATTTGACCTCAAGGAGATTAAAGTAGTGAACCTGGGGTGC
ACTGTGGGAAAGTCAGTGCCAAGTCTGTCCTCAGTCCCCTGGGCTTGTCTCCAAAAAAGG
TTGATGATGACATCGCTGAGGCAGCAGGTGACTGGTCAGGTCTGAGGATGACAGGGACCT
GACCATTCTGAATAGACTGGCCCAGATTGACGCGGCACCTCCTGCCTCTGCCTGATCATC
AAAGTCCTTGAGGAACTACCCCAGAGACAGAAAGAAGCAGAAGAGCATAAAGCTCAGTGG
AAATACCACTTTTGATGCCACTGTCAGCATCGCCTGACAGATGCAGCACTGATCTTTAGC
CAGAGAACTCTCTGGAACCATTGAAGGGATCCTGAGAACTGTACAGTCTGTGGGGTGCCA
TGTCGATGGCCATTGCCTTCTTGACATCGTAGATGACATCAACAGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RRQRCNSLRSSRIRVHPTPATSAMPPKFDPNEIKVVYLRCTGGE-VGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVK-LTIQNRQAQIEVVP
RR..CN.L..S.I.VHPTPA..AMPP.FD..EIKVV.L.CT.G..V.A.S.L.....PLGLSPKKV.DDIA.A.GDW.GLR.T...LTI.NR.AQI...P
Retrocopy
RRSTCNFL*LSCIQVHPTPAVPAMPPTFDLKEIKVVNLGCTVGK/VSAKSVLS----PLGLSPKKVDDDIAEAAGDWSGLRMTGT/LTILNRLAQIDAAP


Parental protein
SASALIIKALKEPPRDRKKQKNSAVKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINS
.ASA...K.L...PRDRKKQK....K.SGN.TFD..V.IA.QM.H.SLARELSGTI..IL.T.QSVGC.VDG....DI.DDINS
Retrocopy
PASA*SSKSLRNYPRDRKKQKS--IKLSGNTTFDATVSIA*QMQH*SLARELSGTIEGILRTVQSVGCHVDGHCLLDIVDDINS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide