RetrogeneDB ID:
retro_mputfur_653
Organism:
Location:
GL896932.1:1449686-1450472 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.7 %
Coverage:
70.86 %
Frameshifts:
5
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_653
GTGATAATGAGAGATCCCAACACTAAGCACTCCAGAGGTTCTGGGTTTGTCACTATGCCA
CTGTGGATGAGCTAGATGCAGCCATGAATGTGAAGCCACACAAAGTGGATGAAAGAGTTG
TAGAACCAAAGAGGGCTGTCTCAATAGAAGATTTTCAAATATCTAGTGCCCACTTAACTG
TGAAAAAGTTTTTTGTTCATGGCATTAAAGAAGACATTGAGGAACATCATTTAAGAGATT
ATTTTGAATAGAATGGGAAAATTGAAGTGACTCAAGTCATGACTGACTGAAGCAGTGGCA
AAAAGAGAAGCTTTGCTTTTGTAACATTTGAGAACCCATGACTCTGTAGACAAGATTGTC
ATTCAAAAATACTACACTGTGAATGGCCACAACTGTGAAGTAAAGAAGGCCCTATCCAAG
CAAGAGATGGGTAATGTTTCATCCACCCAAGGAAGTAAAAGTGGTCCTGGAAACTTTGGT
GGTGGACATGGAGGTAGTTCTGGTGGGAATGACAACTTTGGTCACAAGGAAACTTCAGTG
GGTGAGGTGGCTGTGGTAGCAGTTGAGGTGGTGGTAGATATGGTGGCAGTGGTATGGCTG
CAATGGGTTTGATAATGATGGTGGTTATTGGGGAGGCAGCCCTGGTTACTCTGGAGGAAG
CAGAGGCTATGAAAGTGGTAGACAGACTTACAGAAACAGGGCAGTGGCAATGGTGACTGT
GGCAGTTAGAATAGTTATAACAATGGAGGAGGCGGCTATGGTGGTGGTAGTACAAGCAAC
TTTGGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VVMRDPNTKRSRGFGFVT-YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS
V.MRDPNTK.SRG.GFVT.YATV.E.DAAMN..PHKVD.RVVEPKRAVS.ED.Q...AHLTVKK.FV.GIKED.EEHHLRDYFE..GKIEV...MTD..S
Retrocopy
VIMRDPNTKHSRGSGFVT/YATVDELDAAMNVKPHKVDERVVEPKRAVSIEDFQISSAHLTVKKFFVHGIKEDIEEHHLRDYFE*NGKIEVTQVMTD*SS


Parental protein
GKKRGFAFVTFDD-HDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGR-GGNFSGRGGFGGSRGGGGYGGS
GKKR.FAFVTF...HDSVDKIVIQKY.TVNGHNCEV.KALSKQEM...SS.Q...SG.GNFGGG.GG..GGNDNFG...GNFSG.GG.G.S.GGG.YGGS
Retrocopy
GKKRSFAFVTFEN\HDSVDKIVIQKYYTVNGHNCEVKKALSKQEMGNVSSTQGSKSGPGNFGGGHGGSSGGNDNFGH/QGNFSG*GGCGSS*GGGRYGGS


Parental protein
G-DGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGN-QGSGYGGSGSYDSYNNGGGGGGYGGGSALSWG
G..G.NGF.NDGGY.GG.PGYSGGSRGY.SG.Q.Y.N.QGSG.G..GS..SYNN..GGGGYGGGS....G
Retrocopy
G/YGCNGFDNDGGYWGGSPGYSGGSRGYESGRQTYRN/QGSGNGDCGS*NSYNN--GGGGYGGGSTSNFG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide