RetrogeneDB ID:
retro_mputfur_657
Organism:
Location:
GL896932.1:14042196-14042895 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
99.57 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
LAPTM4A
Parental gene aliases:
No gene alias available
Parental gene description:
lysosomal protein transmembrane 4 alpha [Source:HGNC Symbol;Acc:6924]

Genomic region (view in browser)





>retro_mputfur_657
ATGGTGTCCATGACTTTCAAACGGAGCCGCAGCGACCGGTTCTACAGCACCCGGTGCTGC
GGCTGTTGCCATGTCCGCACCGGGACGATCATTCTGGGGACCTGGTACATGGTGATAAAC
CTATTGATGGCAATTTTGCTGACTGTGGAAGTAACTCATCCAAACTCAATGCCAGCTGTC
AACATTCAGTATGAAGTCATTGGCAATTACTATTCATCTGAGAGAATGGCTGATAATGCC
TGTGTTCTTTTTGCCGTCTCTGTTCTTATGTTTATAATCAGTTCAATGCTGGTATATGGA
GCAATTTCTTATCAAGTGGGTTGGCTGATTCCATTCTTCTGTTACCGGCTTTTTGACTTC
GTTCTCAGTTGCCTGGTTGCTATCAGTTCTCTTACTTACTTGCCAAGAATCAAGGAGTAT
CTGGATCAATTATCTGATTTTCCCTACAAAGATGACCTCCTGGCATTGGACTCCAGCTGC
CTTCTCTTCATTGTTCTTGTGTTCTTCGCCTTATTCATCATTTTTAAGGCATATCTAATC
AACTGCGTTTGGAACTGCTACAAGTATATCAACAACAGAAACCTGCCAGAGATCGCCGTG
TACCCTGCCTTTGAAGCACCTCCGCAGTATGTTTTGCCAACCTACGAAATGGCCGTGAAG
ATGCCTGAGAAAGAGCCACCGCCTCCTTACATACCTGCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVINLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYG
MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVINLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYG
Retrocopy
MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVINLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYG


Parental protein
AISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNRNLPEIAV
AISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQL.DFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNRNLPEIAV
Retrocopy
AISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLSDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNRNLPEIAV


Parental protein
YPAFEAPPQYVLPTYEMAVKMPEKEPPPPYIPA
YPAFEAPPQYVLPTYEMAVKMPEKEPPPPYIPA
Retrocopy
YPAFEAPPQYVLPTYEMAVKMPEKEPPPPYIPA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide