RetrogeneDB ID:
retro_mputfur_661
Organism:
Location:
GL896932.1:4390903-4391230 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
62.16 %
Coverage:
52.43 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_661
CTTCAGGTCTCCTTAAAGAAGTTAGGGGTTAACACTATCTCTGGATTGAAGAAACGACTA
TGTTCACAAACCAGGAAACAACCATCTCCCTTCACAAGCCGAAAAGTTCTAGCATCCCTG
GCAGTGAACACTTCGGCCACCACAGGCAGTGCCAAGACAGAGCAGCTGACAGAAGGGCTG
CCCAGCGTCTTCAAGCAACCTGGTGCAGACAGGCCGCCCACTTCAGGAAGACTGGCTGAA
GCTCTGCCCACACAGTCTCTGGACAGAAAAGCACCATTTGCTACCACAGAGGAGGGGGAG
GAGGATGGAGTTCCAGATCTTGCAGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LQFSLKKLGVNNISG-IEEVNMFTNQGTVIHFNNP-KVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGED
LQ.SLKKLGVN.ISG.IEE..MFTNQ.T.I....P.KV.ASLA.NT...TG.A.T.QLTE.LPS...Q.GAD......RLAEALP.QS.D.KAP.AT.E.
Retrocopy
LQVSLKKLGVNTISG/IEETTMFTNQETTISLHKP\KVLASLAVNTSATTGSAKTEQLTEGLPSVFKQPGADRPPTSGRLAEALPTQSLDRKAPFATTEE


Parental protein
-DDDEVPDLVE
...D.VPDL.E
Retrocopy
GEEDGVPDLAE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide