RetrogeneDB ID:
retro_mputfur_675
Organism:
Location:
GL896933.1:12079428-12079834 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.38 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL27
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L27 [Source:HGNC Symbol;Acc:10328]

Genomic region (view in browser)





>retro_mputfur_675
ATGGGCAAGTTCATGAAACCCGGGAAGGTGGTGCTGGTCCTGGCCGGACGCTACTCCGGG
CGCAAAGTGGTCATCGTGAAGAACATTGATGATGGCACCTCAGACCGTCCCTACAGCCAT
GCTCTGGTGGCGGGAATTGACCGCTACCCCGCAAAGTGACAGCGGCCATGGGCAAGAAGA
AAATCGCCAAGAGGTCAAAGATCAAGTCTTTTGTGAAAGTTTATAACTACAATCACCTCA
TGCCCACAGGTACTCTGTGGATATCCCCTTGGACAAGACTGTCGTCAACAAGGATATCTT
CAGAGACCCTGCTCTTAAACTCAAGGCCCGACGAGAGGCCAAGGTCAAGTTCGAGGAGAG
GTACAAAACCGGCAAAAACAAGTGGTTCTTCCAGAAGCTGCGATTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYP-RKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPT-RYSVDIPLDKTVVNK
MGKFMKPGKVVLVLAGRYSGRK.VIVKNIDDGTSDRPYSHALVAGIDRYP.RKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPT.RYSVDIPLDKTVVNK
Retrocopy
MGKFMKPGKVVLVLAGRYSGRKVVIVKNIDDGTSDRPYSHALVAGIDRYP/RKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPT/RYSVDIPLDKTVVNK


Parental protein
DVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF
D.FRDPALK.KARREAKVKFEERYKTGKNKWFFQKLRF
Retrocopy
DIFRDPALKLKARREAKVKFEERYKTGKNKWFFQKLRF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide