RetrogeneDB ID:
retro_mputfur_676
Organism:
Location:
GL896933.1:12318788-12319598 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
91.3 %
Coverage:
62.44 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
GORASP2
Parental gene aliases:
No gene alias available
Parental gene description:
golgi reassembly stacking protein 2, 55kDa [Source:HGNC Symbol;Acc:17500]

Genomic region (view in browser)





>retro_mputfur_676
ATCATTGGAGCAGATACAGTCATGAATGTGTCTGAAGATCTGTTCAGCCTTATTGAAACA
CATGAAGCGAAACCACTGAAGCTTCATGTGAATAATACAGACACTGATAACTGTCCAGAA
GTGATTATTACACCGAATTCTGCATGGGGTGGTGAAGGCAGCCTAGGATGCGGCATTGGA
TACGGTTATTTGCATCGAATACCAACCCGCCCGTTTGAAGAAGGGAAGAAAATTTCTCTT
CCTGGACAGATGACTGGTACACCTATTACTCCTCTTAAAGATGGGTTTACAGAGGTCCAG
CTGTCCTCAGTTAATCGCCCATCTTTGTCACCACCGGGAACTACAGAAATTGAACAGGGT
CTGTCTGGACTTTCTATTAGCTCAACTCCACCAGCTGTCAGTAATGTTTTCAGTACAGGT
GTCCCAACAGTGCCATTATTGCCACCACAAGTAAACCAGTCCCTTACTTCTGTGCCACCA
ATGAACCCAGCTACTACATTACTAGGTCTGATGCCTTTACCCACAGGACTGCCTAACCTG
CCTGCCCTCCCCAACCTCAACCTCCCCACACCGCACGTCATGCCAGGCGTCAGCTTACCG
GAACTCGTGAACCCGGGTTTGCCACCTCTTCCTTCCTTGCCTCCCCGAAACTTATCTGGC
ATTGCACCTCTCCCCATGCCATACGAGCTCCTCCCGTCATTCCCTTTGGTTCCGGAGGTG
TCTTCTGCAGCAAGCTCAGGGGAGCTGCTCTCCTCTCTCCCACCCACCGGCAGCCCACTC
TTCGACCCTGCCACGACCACTGCAAGGGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSLGCGIGYGYLHRIPTRPFEEGKKISLPGQMTGTPITPLKDGFTEVQ
IIGADTVMN.SEDLFSLIETHEAKPLKL.V.NTDTDNC.EVIITPNSAWGGEGSLGCGIGYGYLHRIPTRPFEEGKKISLPGQMTGTPITPLKDGFTEVQ
Retrocopy
IIGADTVMNVSEDLFSLIETHEAKPLKLHVNNTDTDNCPEVIITPNSAWGGEGSLGCGIGYGYLHRIPTRPFEEGKKISLPGQMTGTPITPLKDGFTEVQ


Parental protein
LSSVNPPSLSPPGTTEIEQGLSGLSISSTPPAVSNVLSTDRVFVSGVPTVPLLPPQVNQSLTSVPPMNPATTLPGLMPLPTGLPNLPALPNLNLPTPHVM
LSSVN.PSLSPPGTTEIEQGLSGLSISSTPPAVSNV.ST....V..VP..P...PQVNQSLTSVPPMNPATTL.GLMPLPTGLPNLPALPNLNLPTPHVM
Retrocopy
LSSVNRPSLSPPGTTEIEQGLSGLSISSTPPAVSNVFSTG---VPTVPLLP---PQVNQSLTSVPPMNPATTLLGLMPLPTGLPNLPALPNLNLPTPHVM


Parental protein
PGVSLPELVNPGLPPLPSLPPRNLPGIAPLPMPSEFLPSFPLVPEVSSAASSGELLSSLPPTGSPPSDPVTTTARA
PGVSLPELVNPGLPPLPSLPPRNL.GIAPLPMP.E.LPSFPLVPEVSSAASSGELLSSLPPTGSP..DP.TTTARA
Retrocopy
PGVSLPELVNPGLPPLPSLPPRNLSGIAPLPMPYELLPSFPLVPEVSSAASSGELLSSLPPTGSPLFDPATTTARA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide