RetrogeneDB ID:
retro_mputfur_678
Organism:
Location:
GL896934.1:4573062-4573857 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.25 %
Coverage:
68.09 %
Frameshifts:
5
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_678
GGAAAAGGAAAAGATTCCCATCATACTGCTGTCATTGGACATGTAAATTCAAGCAAGTCT
ATTACTACCAGCCATCTGTTCTACACATATGGCTGGAATCAACAGAATAACCATCAATGT
TTTTGAGAATGAATCTGCTGAAATGGGAAAGTTTCCTTTAGATATGCCTAGATCTTGGAA
AAACTTAAACTTGAATGTGAATAAGGTATGGCCCTGGGTATCTCCTTGTGGAAATTTGAG
ACCAGTAAATATGTGGCCTTCACTAATATTTCAGGACACAGAGACTTTATAAAAAATATG
ATCACAGATACACCTCAGGCTGACAGTGTTGTTCTGATCTTTGCTGCTGATATTTGTAAA
TTTAAAGCTAGTGTCTCCAAGATTGTGTGGACCTATCAGCATGCCCTACTGGTTTACATG
TTGGGTTTGAACCAAATAACTTTTGGTGTTAATACAGTGGATTCTACCAAGCCATTCTAT
AATTAAAAGAGATTTGAGGAAGTCAGCCTCTACATTAAGAAAAATTTCCATAAACTTAAC
ACAGTAACATTTGTGCCAACTTCTGATTTGAGTGGTGGAATGTGTTGGAACCAAGTGCTA
AAATACCTTGGTTCAAGAGCTGGAAATTCACTAGAAGGATGGAAGTGCCAGTGGAATTAC
ACTGCTTGAAGCTCTGGATTATATCCTGCCACCAAGTCATACAATTGACAAGTCCTTCAT
CTCTCCCTCCAGATTGTTTATAAAATTGGTGGTAGTAGTATAGCTGCTGTGAGCTGAGTG
GAGACTAGTGTTCTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GKEKTHINIVVIGHVDSGKSTTTGHLIYKCG-GIDKRTIEKFEKEAAEMGKG-SFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFI
GK.K......VIGHV.S.KS.TT.HL.Y..G.GI...TI..FE.E.AEMGK..SF.YA..L.KLK.E.E.G....ISLWKFETSKY.V......GHRDFI
Retrocopy
GKGKDSHHTAVIGHVNSSKSITTSHLFYTYG\GINRITINVFENESAEMGKF/SFRYA*ILEKLKLECE*GMALGISLWKFETSKY-VAFTNISGHRDFI


Parental protein
KNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGD
KNMIT.T.QAD..VLI.AA....F.A..SK...T..HALL.Y.LG..Q...GVN..DST.P.Y..KR.EE.....S.YIKK......TV.FVP.S...G.
Retrocopy
KNMITDTPQADSVVLIFAADICKFKASVSKIVWTYQHALLVYMLGLNQITFGVNTVDSTKPFYN*KRFEEV----SLYIKKNFHKLNTVTFVPTSDLSGG


Parental protein
-NMLEPSANMPWFKGWKVTR-KDGNASGTTLLEALDCILPPTRPTDKP-LRLPLQDVYKIGGIGTVPVGRVETGVL
.N.LEPSA..PWFK.WK.TR.KDG.ASG.TLLEALD.ILPP....DK..L.L.LQ.VYKIGG.....V..VET.VL
Retrocopy
/NVLEPSAKIPWFKSWKFTR/KDGSASGITLLEALDYILPPSHTIDKS/LHLSLQIVYKIGGSSIAAVS*VETSVL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide