RetrogeneDB ID:
retro_mputfur_681
Organism:
Location:
GL896934.1:12298487-12298884 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.44 %
Coverage:
96.4 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
Rps17
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S17 [Source:MGI Symbol;Acc:MGI:1309526]

Genomic region (view in browser)





>retro_mputfur_681
GGCTACATTTGCACCAAAACCATGAGGAAGGTGGTGCGGGTCATCACGGAGAAGTACTAC
ATGTTGCCTGAGCAATGACTTCCACACCAACAACACTGTGTGTGGGGACATCGCCGTAAT
TCCCAGCAAGAAGCTCTGCAGCAAGATAGCAGGCTGGCTCACGCATCTGATGGGCGGGAA
TCAGGGAGGTCTGGTGAGAGGTATCTGCATCAAACTGCAGGAGGAGAGAGGAAGAAAAGA
TAATTATGTCCCTGAAGTCTCAGTCCTGGAGCCGGAGATCATCACAGTGGATCCTGATGC
CAAAGAACCATGGAAGCCCTTCTTTGGCATTCTGTGAAAACTGTAGGTCTCTCAGCCTGC
AACTGGGATGAATTTCAAAACACCACGTGGAGTTGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GRVRTKTVKKAARVIIEKYYTR-LGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDP
G...TKT..K..RVI.EKYY...L.NDFHTN..VC..IA.IPSKKL..KIAG..THLM...Q.G.VRGI.IKLQ.EER.R.DNYVPEVS.L..EII.VDP
Retrocopy
GYICTKTMRKVVRVITEKYYML\LSNDFHTNNTVCGDIAVIPSKKLCSKIAGWLTHLMGGNQGGLVRGICIKLQ-EERGRKDNYVPEVSVLEPEIITVDP


Parental protein
DTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV
D.KE..K...FG.L..L.V.QP..GMNFKTPRG.V
Retrocopy
DAKEPWKPF-FGIL*KL*VSQPATGMNFKTPRGVV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide