RetrogeneDB ID:
retro_mputfur_684
Organism:
Location:
GL896934.1:2391860-2392256 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.94 %
Coverage:
58.41 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
PGAM5
Parental gene aliases:
No gene alias available
Parental gene description:
phosphoglycerate mutase family member 5 [Source:HGNC Symbol;Acc:28763]

Genomic region (view in browser)





>retro_mputfur_684
AGGCAAGAACCACAGTCCCTGCTCAACCTACAGAAGAGGTACCTGGACTCTGGAGAAGAG
GAATTGGCCTGCAGCCTGGACCACTACGAAGCCAAGGCCAGGCCACGCATCTTTCTTATC
TGGCGCTCCTGGAACCACGTGGATTCCTCCATGGAGAACGATCATACTCTGAAGCTCTTG
GGTCATGAACAGACTGAACTAACTGGGCTCTGACTCGCAAGCTTGGGGTTGAAGTTTAAT
AAAATTGTCCATTCTGCCGTGTGTCCTGCAAGAGAAACCACCAATATCAGCAGCAAACAC
CTGCCTGGCATCTGCAAGATCAGCACAGACCTGCTGAGGGAAGGCACCATCATCGAGACC
AACCCACCTACTTCCCGCTGGAAGAACGAGGCTGTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RREPLSLVNLRKRNLDSGEEELASRLDHCKAKATRHIFLIRHSQYHVDASLEKDRTLTPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISKH
R.EP.SL.NL.KR.LDSGEEELA..LDH..AKA...IFLI..S..HVD.S.E.D.TL..LG.EQ.ELTGL.LASLGLKFNKIVHS....A.ETT.I.SKH
Retrocopy
RQEPQSLLNLQKRYLDSGEEELACSLDHYEAKARPRIFLIWRSWNHVDSSMENDHTLKLLGHEQTELTGL*LASLGLKFNKIVHSAVCPARETTNISSKH


Parental protein
LPGVCKVSTDLLREGAPIEPDPPVSHWKPEAV
LPG.CK.STDLLREG..IE..PP.S.WK.EAV
Retrocopy
LPGICKISTDLLREGTIIETNPPTSRWKNEAV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide