RetrogeneDB ID:
retro_mputfur_685
Organism:
Location:
GL896934.1:2493698-2494127 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.71 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
Rpl26
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]

Genomic region (view in browser)





>retro_mputfur_685
ATGAAGTTGAATACCTTTGCCACTTCTGACCACAGCAAAAACCATAAAAAGTATTTTGAT
GTACCTTCCCACATTTGCAGGAAGATTGTGTCTTCCTTTCTTTCCAAAGAACTGAGACAG
AAGTTACAATGTTTGATCCATCCCCATCCAAGAGGATGATGATGTACAAGTTGGGAAAGA
ACACTGTAAAGGTCAGCAAACTGGCAAAGTCATCCGGGTTCACAGGAAGAATCTGTTATC
TACATTGAGCGAGTACAGCAAGAAAAGGCAAATGGCACAACTGTCCATGTGGCCATTCAT
CCTAGTGAGGTAGTTATCACTAGACTAAAAATGGACAATGGCCATGAAAAGATCCTTGAA
CATAAACCCAAATCTCACCAAATAGGAAAAGGGCAAATATAAGAAGAAACAATTGAAAAG
ATGCAGGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQK-YNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKY-VIYIERVQREKANGTTVHVG
MK.N.F.TSD.SKN.K..F..PSHI.RKI.SS.LSKELRQK.YNV.S.PI..DD.VQV...H.KGQQ.GKV..V.RK...VIYIERVQ.EKANGTTVHV.
Retrocopy
MKLNTFATSDHSKNHKKYFDVPSHICRKIVSSFLSKELRQK\YNV*SIPIQEDDDVQVGKEHCKGQQTGKVIRVHRKNL/VIYIERVQQEKANGTTVHVA


Parental protein
IHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE
IHPS.VVITRLK.D....KILE.K.KS.Q.G..KG...EETIEKMQE
Retrocopy
IHPSEVVITRLKMDNGHEKILEHKPKSHQIG--KGQI*EETIEKMQE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide