RetrogeneDB ID:
retro_mputfur_689
Organism:
Location:
GL896935.1:6446411-6446811 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
91.85 %
Coverage:
64.11 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
GAR1
Parental gene aliases:
No gene alias available
Parental gene description:
GAR1 ribonucleoprotein homolog (yeast) [Source:HGNC Symbol;Acc:14264]

Genomic region (view in browser)





>retro_mputfur_689
GGTGGCAGTGGCGGCCGAGGAGGATTTGGACGAGGAGGTGGCCGCGGAGGCTTTAACAAA
GGCCAGGACCAAGGACCTCCGGAACATGTAGTTTTATTAGGAGTTCCTGCATCCCTGTGA
AGATGACATAGTTTGTAAATGTACTGCAGATGAAAATAAGGTGCCTTATTTCAATGCTCC
AGTTTATTTAGAGAACAAAGAACAGATTGGTAAAGTGAATGAAATATTTGGACAACTTAG
AGATTTTTATTTTTCTGTTAAATTGTCAGAAAATATGAAGGCATCTTCCTTTAAAAAACT
GCAGAAATTTTATATACACCCATATAAACTGTTACCACTGCAGAGGTTTTTACCTCGACC
TCCAGGTGAGAAGGGCCCTCCAAGAGGTGGTGGCAGGGGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GGGGGRGGFGRGGGRGGFNKGQDQGPPEHVVLLG-EFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSFK
GG.GGRGGFGRGGGRGGFNKGQDQG.P...V.L..EFLHPCEDDIVCKCT.DENKVPYFNAPVYLENKEQIGKV.EIFGQLRDFYFSVKLSENMKASSFK
Retrocopy
GGSGGRGGFGRGGGRGGFNKGQDQG-PPEHVVLL\EFLHPCEDDIVCKCTADENKVPYFNAPVYLENKEQIGKVNEIFGQLRDFYFSVKLSENMKASSFK


Parental protein
KLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRG
KLQKFYI.PYKLLPLQRFLPRPPGEKGPPRGGGRG
Retrocopy
KLQKFYIHPYKLLPLQRFLPRPPGEKGPPRGGGRG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide