RetrogeneDB ID:
retro_mputfur_690
Organism:
Location:
GL896935.1:8594089-8594867 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.29 %
Coverage:
99.62 %
Frameshifts:
6
Stop codons:
2


Parental gene:
Parental gene symbol:
Nsa2
Parental gene aliases:
No gene alias available
Parental gene description:
NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913883]

Genomic region (view in browser)





>retro_mputfur_690
CCACAAAACCAATATATTGAGTTACACTGGAAGCACCATGGCCATTGTTTGGATTACCAG
GAGAAAAAGAGGAAGAGGGAAGGTATGGAGACTCAAGAACATTCAAAGAAGACAAAAAGG
ATGATTGGTCTGAAAGGCAAGCTCTACCATTAACAGCGCCAGGCTGAGAAAATACAAACG
AAAATGACTATCAGGACGCATGAAAGGAGAAGCTCCAAACAAAAGAATGATGGTGAGAGA
CTCCATGAGGAGAGGTGCTGCACGTCTACTGGGCAGGGAAGGACTGTCCCCAGCTCAAGT
CTTTTCCAATGGGATGAAACAAAAATGCCAAGAGAAAGCGGGCAAATGGGAAGTCCCTTT
GCCCCAAAGTTCATGCCCAGGGAGAAACAGAAGTATGGAAAGTGTTTCAAACAGGAAAGA
GAAACAACAAAGCATGGAAGAGGTTAGTTACTAAAGTCTGCTTTCCTGAAAATGGCTTCC
TTGAAAACCCCCTAAATACGAGAGATTTTGTAAGGCCAATGGGCTTACATTGCCAAATGC
CCATGCAACACATTCTGAATGGAAAGCCACCTTTCACTTGCCAATAGTTGGCGTAAAAAT
GAATCCCTCATCCCCGCTACGTACTACTTTGGGTGTTATTACCAAAAGGTACAGTCACCA
AGATGAATTTGAGGGAGTTGGGCCATGTAACACAAGGAGGCGAGAGGATCTGGGGAAAAC
ATGCCCGGGTACCAATGATCCTGAAAGCAATAGAGGCACAAAGGCAGCCCTGCTGGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNT-KQKNDEK-TPQGAV-PAYLLDREGQSR
PQN.YIELH.K..G..LDY.EKKRK.EG.E..E.SKK.K.MIGLK.KLYH.QR.AEKIQ.K.TI..HE.R........E..TP.G.V..A.LL.REG.S.
Retrocopy
PQNQYIELHWKHHGHCLDYQEKKRKREGMETQEHSKKTKRMIGLKGKLYH*QRQAEKIQTKMTIRTHERRSSKQKNDGER/TP*GEV/AARLLGREGLSP


Parental protein
AKVLSNMIKQKRKEKAGKWEVPLP-KVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTR-KPPKYERFIRPMGLRFKKAHVTHPELKATFCLPI
A.V.SN..KQK..EKAGKWEVPLP.KV.AQGETEV.KV..TGKR..KAWKR.VTKVCF...GF...KPPKYERF....GL....AH.TH.E.KATF.LPI
Retrocopy
AQVFSNGMKQKCQEKAGKWEVPLP\KVHAQGETEVWKVFQTGKRNNKAWKRLVTKVCFPENGFLE/KPPKYERFCKANGLTLPNAHATHSEWKATFHLPI


Parental protein
LGVKKNPSSPLYTTLGVIT-KGTVIEVNVSELGLVTQGGKVIWGKYAQV-TNNPENDGCINAVLLV
.GVK.NPSSPL.TTLGVIT.KGTV...N..ELG.VTQGG..IWGK.A.V.TN.PE......A.LLV
Retrocopy
VGVKMNPSSPLRTTLGVIT\KGTVTKMNLRELGHVTQGGERIWGKHARV/TNDPESNRGTKAALLV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide