RetrogeneDB ID:
retro_mputfur_694
Organism:
Location:
GL896936.1:4220503-4222437 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
95.98 %
Coverage:
99.85 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Heat shock cognate 71 kDa protein [Source:UniProtKB/TrEMBL;Acc:G9K4X7]

Genomic region (view in browser)





>retro_mputfur_694
TCTAAGGGACCTGCAGTTGGCATTGATCTTGGCACCACCTACTCCTGCGTGGGTGTCTTC
CAGCACGGGAAAGTGGAAATAATTGCCAATGATCAGGGAAACTGGACCACCCCAAGTTAT
GTCGCCTTCACGGACATTGAACGATTGATCGGTGATGCTGCGAAGAACCAAGTTGCAATG
AACCCCACCAACACAGTTTTTGATGCCAAACGCCTGATTGGACAGAGATTTGATGATGCT
GTTGTCCAGTCTGATATGAAGCATTGACCTTTCATGGTGGTGAATGATGCTGGCAGGCCC
AAGGTCCAAGTAGAATACAAGGGAGAGACAAAAAGCTTTTATCCAGAAGAGGTGTCTTCT
ATGGTTTCGACGAAAATGAAGGAAATCGCAGAGGCTTATCTTGGGAAGACCGTTACCAAT
GCAGTTGTCACAGTACCTGCGTACTTCAATGATTCTCAGCGTCAGGCTACCAAAAATGCT
GGAACTATTGCTGTTCTCAATGTACTTCAAATCATCAATGAGCCAACTGCTGCTGCTATT
GCTTATGGCTTAGACAAAAAAGTTGGAGCTGAAAGGAATGTACTGATCTTTGACTTAGGA
GGTGGCACTTTTGATGTGTCAATCCTTACTATTGAAGATGGGATCTTTGAGGTTAAGTCC
ACAGCTAGAGACTCCCACTTAGGTGGAGAAGACTTTGACAACCGAATGGTCAACCATTTT
ATTGCAGAGTTCAAGCGCAAACATAAGAAAGATATCAGTGAAAACAAGAGGGCAGTTCGT
TGTCTCTGTACTGCTTGTGAACGTGCTAAGCGTACACTTTCTTCCAGCACCCAGGCCAGT
ATTGAGATTGATTCTCTGTATGAAGGAATCGACTTCTATACCTCTATCACTCGTGCCCGG
TTTGAAGAATTAAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCTCTT
CGGGATGCCAAGTTAGACAAGTCTCAGATCCATGATATTGTTCTGGTGGGTGGTTCTACC
CGTATCCCCAAGATTCAGAAACTTCTCCAAGATTTCTTCAATGGAAAAGAACTGAATAAG
AGCATCAACCCTCATGAAGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATCCTTTCT
GGAGACAAATATGAAAATGTTCAAGATTTGCTGCTGTTGGATGTCACTCCACTTTCTCTT
GGCATTGAAACTGCTGGAGGAGTCATGACTATTCTTATCAAGCATAATACTACCATTCCT
ACCAAACAGACACAGACCTTCACTACCTACTCCGACAACCAACCTGGTGTGCTTATTCAG
GTGTATGAAGGTGAGCGTGCCATGACCAAGGACAACAGTCTACTTGGAAAGTTTGAACTC
ACAGGCATACCTCCTGCTCCTCGTGGTGTCCCTCAGATTGAGGTCACTTTCGATATTGAT
GTTATGGTCTCCTCAATGTCTCTGCCGTGGATAAGAGCACAGGAAAAGAGAACAAGATTA
CCATCACTAATGACAAGGCCTGCTTGAGCAAGGAAGATATTGAGCGCATAGTCCAGGAAG
CTGAGAAGTACAAAGCTGAAGATGAGAAACAGCGGGACAAGGTGTCTTCCAAGAATTCAC
TTGAGTCTTACGCATTCAACATGAAAGCAACTGTTGAAGATGAAAAACTTCAGGGCAAGA
TAAATGATGAAGACAAACAGAAGATTCTTGACAAGTGCAATGAAATCATCAACTGGCTTG
GTAAGAACCAGACTGCAGAGATGGAAGAATTTGAACACCAGCAGAAAGAGTTGGAGAAAG
TCTGCAACCCCATCATCACCAAGCTGTACCAGAGTGCAGGGGGCATGCCAGGAGGAATGC
CTGGAGGCTTCCCTGGTGGTGGAGCTCCTCCCTCTGGTGGTGCCTCCTCTGGGCCCACCA
TTGAAGAGGTTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRP
SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGN.TTPSYVAFTD.ERLIGDAAKNQVAMNPTNTVFDAKRLIG.RFDDAVVQSDMKH.PFMVVNDAGRP
Retrocopy
SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNWTTPSYVAFTDIERLIGDAAKNQVAMNPTNTVFDAKRLIGQRFDDAVVQSDMKH*PFMVVNDAGRP


Parental protein
KVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLG
KVQVEYKGETKSFYPEEVSSMV.TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATK.AGTIA.LNVL.IINEPTAAAIAYGLDKKVGAERNVLIFDLG
Retrocopy
KVQVEYKGETKSFYPEEVSSMVSTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKNAGTIAVLNVLQIINEPTAAAIAYGLDKKVGAERNVLIFDLG


Parental protein
GGTFDVSILTIEDGIFEVKSTAGDSHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKCTLSSSTQASIEIDSLYEGIDFYTSITRAR
GGTFDVSILTIEDGIFEVKSTA.DSHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVR.L.TACERAK.TLSSSTQASIEIDSLYEGIDFYTSITRAR
Retrocopy
GGTFDVSILTIEDGIFEVKSTARDSHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRCLCTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRAR


Parental protein
FEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSL
FEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINP.EAVAYGAAVQAAILSGDK.ENVQDLLLLDVTPLSL
Retrocopy
FEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPHEAVAYGAAVQAAILSGDKYENVQDLLLLDVTPLSL


Parental protein
GIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDID-ANGILNVSAVDKSTGKENK
GIETAGGVMT.LIK.NTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN.LLGKFELTGIPPAPRGVPQIEVTFDID...G.LNVSAVDKSTGKENK
Retrocopy
GIETAGGVMTILIKHNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNSLLGKFELTGIPPAPRGVPQIEVTFDID/CYGLLNVSAVDKSTGKENK


Parental protein
ITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELE
ITITNDK..LSKEDIER.VQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWL.KNQTAE.EEFEHQQKELE
Retrocopy
ITITNDKACLSKEDIERIVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLGKNQTAEMEEFEHQQKELE


Parental protein
KVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD
KVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD
Retrocopy
KVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide