RetrogeneDB ID:
retro_mputfur_695
Organism:
Location:
GL896936.1:7705565-7706067 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.07 %
Coverage:
65.53 %
Frameshifts:
6
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS3A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]

Genomic region (view in browser)





>retro_mputfur_695
ATGGCGGTTGGCAGGAACCAGCGCCTTCATGAGAGGCAGCAAAAAGGGAGCCAAGAAGAA
AGTGGTTGATCCATTTTCTAAGAAAGATTGGTACAAACCTGCTAGGTTCAATATAAGAAA
TATTGGAAAAATACTAGTCACGAGAACTCAAGGAACTAAAATCACTTCTGATGGCTTCCA
GGTCATGTTTTCAAAGTGAGCCTTGTGATCTGCAGAATGTTGAAGTTGCATTTAGAAAAT
TCAAGCTTATTCTGAGGCAGTTCAGGGCAAATACTGCCTAACTAATTTCCATGACATGAA
TCCTACATGTGACAAAATGTGCTCCATGGCCAACAAAATGGCGGACCATGACTAAAGCTC
ATGTTGACGTCAAGAATACCAATGGTTATTTGCTTCATCTATTTTGTTTTGGCTTTACTA
CAAAACGCAACATCAGATTTGGAAGCCCTCTTGCACTCAGCAGGTCCACCACATTCGGAA
GAAGGTGATGGAAATCATGACA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAVGKNKRL-TKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDG-LKGRVFEVSL-ADLQNDEVAFRKFKLI-TEDVQGKNC
MAVG.N.RL...G.KKGAKKKVVDPFSKKDWY....PA.FNIRNIGK.LVTRTQGTKI.SDG.L.G.VF.VSL..DLQN.EVAFRKFKLI..E.VQGK.C
Retrocopy
MAVGRNQRL\MRGSKKGAKKKVVDPFSKKDWYK---PARFNIRNIGKILVTRTQGTKITSDG/LPGHVFKVSL/CDLQNVEVAFRKFKLI/SEAVQGKYC


Parental protein
LTNFHGMDLTRDKMCSMVK-KWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN-NQIRKTSYAQHQQVRQIRKKMMEIMT
LTNFH.M..T.DKMCSM...KW.TM..AHVDVK.T.GYLL.LFC.GFT.KRN..QI.K.S....QQV..IRKK.MEIMT
Retrocopy
LTNFHDMNPTCDKMCSMAN\KWRTMTKAHVDVKNTNGYLLHLFCFGFTTKRN/HQIWKPSCT--QQVHHIRKKVMEIMT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide