RetrogeneDB ID:
retro_mputfur_697
Organism:
Location:
GL896936.1:6343430-6344099 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
79.46 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CHMP4B
Parental gene aliases:
No gene alias available
Parental gene description:
charged multivesicular body protein 4B [Source:HGNC Symbol;Acc:16171]

Genomic region (view in browser)





>retro_mputfur_697
ATGTCACGGTTCGGGAAACTGTTTGGAGCAGGAAGGGGTAAGACCAGAAAGGGCACCCTG
ACCCCTCCGGATGCCATCCAGTGGCTGTGGGACATGATGGAGATGCAAAGTAAAAAGCAG
GAATTCCTGGAGATGAAGCTGGAGCAGGAGCTGACCGCCACCAAGAAGCCCAGCACAGAA
AGAAGCCCGTGGGGCCTCCAGGCACCGAAGCATAGGAAGAGGTACAGAAAGCAGCTGGCG
CAGATCGATGGCACACTATCCACCATGGAGTTTCAGCGGGAGGCCCTGGATAACGCCAGG
ACCAACACAGAGCTGCTCAAGAACATGGGCTCTGCTGCTAAGGCCACGAAGGCTGCCCAC
GACAACACGGCCATCGACAAAGTTGATGAGTTAAAGCAGGACATTGCTGACCAGCAAGAA
CTTGCAAGGGAGCTTTCAACAGCTATTTCAAAACCTGTAGGATATGGAGAAGGGTTTGAT
GAGGATGAGCTCATGGCAGAATTAGAAGAATTAGAACAGGAAGAACTAGACAAGAATTTG
CTGGAAGTCAGCGGACCTGCAACAGTCCCTCTACCAAATGTTCCCTCTATAACCTTACCA
TCAAAACCCAGCAAGAAGGAAGAGAAAGAGGATGACATGAAGGAATTGGAGAACTGGGTT
GGATCCATT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSVFGKLFGAGGGKAGKGGPTPQDAIQRLRDTEEMLSKKQEFLETKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAN
MS.FGKLFGAG.GK..KG..TP.DAIQ.L.D..EM.SKKQEFLE.K.EQELTA.KK..T......LQA.K..KRY.KQLAQIDGTLST.EFQREAL.NA.
Retrocopy
MSRFGKLFGAGRGKTRKGTLTPPDAIQWLWDMMEMQSKKQEFLEMKLEQELTATKKPSTERSPWGLQAPKHRKRYRKQLAQIDGTLSTMEFQREALDNAR


Parental protein
TNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSITLP
TNTE.LKNMG.AAKA.KAAHDN..IDKVDEL.QDIADQQELA.E.STAISKPVG.GE.FDEDELMAELEELEQEELDKNLLE.SGP.TVPLPNVPSITLP
Retrocopy
TNTELLKNMGSAAKATKAAHDNTAIDKVDELKQDIADQQELARELSTAISKPVGYGEGFDEDELMAELEELEQEELDKNLLEVSGPATVPLPNVPSITLP


Parental protein
SKPTKKKEEEEDDMKELENWAGSI
SKP..KKEE.EDDMKELENW.GSI
Retrocopy
SKPS-KKEEKEDDMKELENWVGSI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide