RetrogeneDB ID:
retro_mputfur_7
Organism:
Location:
GL896903.1:19800999-19801767 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.22 %
Coverage:
96.73 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
YWHAZ
Parental gene aliases:
No gene alias available
Parental gene description:
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855]

Genomic region (view in browser)





>retro_mputfur_7
TGTCTGTCTGTCACCAGAGCCATGGAGAGAGCCAGTCTGATCCAGAAGGCCAAGCTGGCA
GAGCAGGCTGAACGCTATGAGGACATGGCAGCCTACATGAAGAGCGCTGTGGAAAAGGGT
GAGGAGCTATCCTGCGAAGAGCGAAACCTGCTGTCAGTGGCCTACAAGAATGTGGTGGGT
GGCCAGAGGGCTGCCTGGAGGGTCCTGTCCAGTATCGAGCAGAAAGGCAACGAAGAGGGC
TCGGAAGAGAAGGGCCCCGAGGTGCGAGAGTACCGGGAGAAGGTGGAGACTGAGCTCCGG
GGCGTGTGTGACACGGTGCTGGGCCTGCTGGACACCCACCTCATCAAGGAGGCAGGTGAT
GCTGAAAGTCGGGTGTTCTACCTGAAAATGAAGGGCGACTACTACCGCTACCTGGCTGAG
GTGGCCACCGGTGATGACAAGAAGCGCATCATTGACTCAGCCCGGTCGGCCTACCAGGAG
GCCATGGACATCAGCAAGAAGGAGATGCCGCCCACCAACCCCATCCGCCTGGGCCTGGCC
CTGAACTTTTCAGTCTTCCACTATGAGATCGCCAACAGCCCCGAGGAGGCCATCTCACTG
GCCAAGACCACCTTCGATGAGGCCATGGCTGACCTGCACACCCTCAGCGAGGACTCCTAC
AAAGACAGCACCCTCATCATGCAGCTGCTGAGAGACAACCTGACGCTGTGGACCGCCGAC
AACGCCGGGGAAGAGGCAGGCGAGGCTCCCGAGGAACCCCAGAGCTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQK--TEGAEKKQQMAREYREKIETELRDICNDVL
M....L.QKAKLAEQAERY.DMAA.MKS..E.G.ELS.EERNLLSVAYKNVVG..R..WRV.SSIEQK...EG.E.K....REYREK.ETELR..C..VL
Retrocopy
MERASLIQKAKLAEQAERYEDMAAYMKSAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKGNEEGSEEKGPEVREYREKVETELRGVCDTVL


Parental protein
SLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDE
.LL...LI..A..AES.VFYLKMKGDYYRYLAEVA.GDDKK.I.D....AYQEA..ISKKEM.PT.PIRLGLALNFSVF.YEI.NSPE.A.SLAKT.FDE
Retrocopy
GLLDTHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE


Parental protein
AIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA
A.A.L.TLSE.SYKDSTLIMQLLRDNLTLWT.D..G.EA
Retrocopy
AMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide