RetrogeneDB ID:
retro_mputfur_70
Organism:
Location:
GL897060.1:4354676-4355597 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.98 %
Coverage:
78.35 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_70
ATGGTGGATTACTATGAAGTTCTAGGAGTGCAGCGATATGCTTCACCTGAGGACATTAAA
AAGGCTTATCGTAAAGTGGCACTCAAATGGCACCCTGATAAAAATCCAGAAAATAAAGAA
GAAGCTGAGAGAAAATTCAAAGAAGTAGCTGAGGCATATGCGGTATTATCAAATAATGAA
AAAAGGGACATTTATGATAAATATGGCCAAGAAGGATTAAATGGCAGAGGCAGAAGTCAC
TTCGATGATTCTTTTGACTATGGCTTCACATTCTGTAAGGCAGATGATGTCTTTACAGAA
ATTTTTGATGAAAGGGAAACATTTTCATTTCATTTCTTTGAGGACTCACTTGAGGAACTT
TTAAATAGTCCAAGAAGCTCCTGTGGAAGCAAAGATACAAGATCCTTTTTTGCTACCTCA
AGTCAATACCCAGTTTTTGAGAGATTTTCTTCATATGATACAGGATATACATCCTATGGT
TCACTGGGCCACAAGGGCCTTCATTCATTCTCCTCCCTGGCATTCGATGAAAGTGGGATA
AGCAACTACGTATCTGTTACAGCTTCAGATAAGACTGGTAATAGAAATACAAACACACAG
AGAATTACTGAGAACAATCAAGAAATAGAAGTTGATGATGTTGAGTTGAACTCCTTCCTT
ATAAATGGTGTGGAAGATGAAGAAGGCTTTGCAGAAGAATGCAGCTGGAGAAGAGAGTCA
TTTAACAATTACTCACCAAAGTCCCATAGCCTCAAACAAGTAACTCAATATACTTTTGTG
GATAATGATGAACAAGATGTATATTGGGTCACCAGCAGCTGGAATCCCTCTATGCTCTCA
GCAGGATTCAAAGAAGATGGTAAGAGGAAAAAAAAAAAGCATAAAGCCGTGCAGAAGAAG
TCAACTAAAAACAATCGTTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDRYGKEGLNGGGGGIHFDNPFEFGFTFRNPDDVFR
MVDYYEVLGVQR.AS.EDIKKAYRK.ALKWHPDKNPENKEEAERKFK.VAEAY.VLS...KRDIYD.YG.EGLNG.G...HFD..F..GFTF...DDVF.
Retrocopy
MVDYYEVLGVQRYASPEDIKKAYRKVALKWHPDKNPENKEEAERKFKEVAEAYAVLSNNEKRDIYDKYGQEGLNGRGRS-HFDDSFDYGFTFCKADDVFT


Parental protein
EFFGGRDPFSFDFFEDPFEEFFGSRRGPRGSRNRSTGSFFSAFSGFPSFGGGFPAFDSGFTSFASPGHGGLTSFSSAAFGGSGMGNFKSISTSTKMVNGR
E.F..R..FSF.FFED..EE...S.R...GS....T.SFF...S..P.F...F...D.G.TS..S.GH.GL.SFSS.AF..SG..N..S...S.K..N.R
Retrocopy
EIFDERETFSFHFFEDSLEELLNSPRSSCGSKD--TRSFFATSSQYPVF-ERFSSYDTGYTSYGSLGHKGLHSFSSLAFDESGISNYVSVTASDKTGN-R


Parental protein
KITTKRIVENGEERVEVEENGQLKSLTINGVADENALLEECRRRGQSALPAQPASTS
...T.RI.EN..E..EV.....L.S..INGV.DE....EEC..R..S.....P.S.S
Retrocopy
NTNTQRITENNQE-IEVDD-VELNSFLINGVEDEEGFAEECSWRRESFNNYSPKSHS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide