RetrogeneDB ID:
retro_mputfur_700
Organism:
Location:
GL896937.1:8619542-8619881 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.79 %
Coverage:
71.25 %
Frameshifts:
0
Stop codons:
5


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_700
ATGACCAACACAAGGTGAAAGAGGAGAGGCACCCATTGTATGTTTTTCAGGCCTTTCAGA
AAGCAGGAAGTGGTTCCTTTGGCCACATGCATGTGAATCTACAAGAAAGGTGATATTGTA
GACTTCAAGGGAATGGTCACTCTTTCTAAAGGGATGCCCGCAAATGTTACCATGGCAACA
CTGGAAGTTTAGGATGTTACCTAGCATGCTGTTCACATTGTTATAAACAGATAAGTTAAG
GGAAAGATTCTTACCAAGGGAATTAATGTATATACTGAGCATATTAAGCACTCAAATAGT
GGAGCTAGTTTCCGGAAGCATGCGAAAGAAAATGATCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSK
MTNT..KRRGT..MF.RPFRK..VVPLAT.M.IYKKGDIVD.KGM.T..KGMP.......T..V..VT.HAV.IV.N..VKGKIL.K.INV..EHIKHS.
Retrocopy
MTNTR*KRRGTHCMFFRPFRKQEVVPLATCM*IYKKGDIVDFKGMVTLSKGMPANVTMA-TLEV*DVT*HAVHIVINR*VKGKILTKGINVYTEHIKHSN


Parental protein
SRDSFLKRVKENDQ
S..SF.K..KENDQ
Retrocopy
SGASFRKHAKENDQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide