RetrogeneDB ID:
retro_mputfur_706
Organism:
Location:
GL896938.1:1388139-1388576 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
99.32 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
SRP19
Parental gene aliases:
No gene alias available
Parental gene description:
signal recognition particle 19kDa [Source:HGNC Symbol;Acc:11300]

Genomic region (view in browser)





>retro_mputfur_706
GTGAAGATGGCCTGTGCAGCCGCACGGTCCCCGCCGACCAAGACAGGTTCATTTGTATCT
ATCCTGCTTATTTAAATAACAAGAAGACCATCGCGGAGGGGAGGCGAATTCCCATAAGTA
AGGCTGTTGAAAATCCTACAGCTACTGAGATTCAAGATGTGTGCTCAGCAGTTGGACTTA
ATGTATTCCTTGAGAAAAATAAAATGTACTCTAGAGAGTGGAATCGTGATGTTCAGTACA
GGGGCAGAGTCCGGGTCCAGCTGAAACAGGAAGACGGCAGCCTCTGTCTTGTACAGTTCC
CGTCACGTAAGTCTGTAATGTTGTATGTAGCAGAAATGATACCTAAACTAAAAACAAGGA
CACAAAAAACGGGAGGTGGTGACCAAAGTCTTCAGCAAGGAGAGGGAAGTAAAAAAGGGA
AAGGAAAGAAGAAGAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VKMACAAARS-PADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQ
VKMACAAARS.PADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQ
Retrocopy
VKMACAAARS/PADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQ


Parental protein
FPSRKSVMLYVAEMIPKLKTRTQKTGGGDQSLQQGEGSKKGKGKKKK
FPSRKSVMLYVAEMIPKLKTRTQKTGGGDQSLQQGEGSKKGKGKKKK
Retrocopy
FPSRKSVMLYVAEMIPKLKTRTQKTGGGDQSLQQGEGSKKGKGKKKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide