RetrogeneDB ID:
retro_mputfur_707
Organism:
Location:
GL896938.1:2019329-2019848 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
50.84 %
Coverage:
69.05 %
Frameshifts:
5
Stop codons:
0


Parental gene:
Parental gene symbol:
PDCD2
Parental gene aliases:
No gene alias available
Parental gene description:
programmed cell death 2 [Source:HGNC Symbol;Acc:8762]

Genomic region (view in browser)





>retro_mputfur_707
CAAGCAGGCTTATTCACCAATCATCTGGACAAGAGAATTCCAGACTGCCACCTCCTCTTT
CCAGGACTTGAAACCAGAATGGAAACAGAAGATGGGGTTACACCTGAAGTTGTAGAAAAG
GATGATGCTGCAGAGATGATAGAAAGCGTGGGAGAAGCGCCTGAAAGAGAACTGGATGCC
CTAGCAAAACATGAATCCAGGGAAAATAGCACTTTGCAGAAGTTAAACCCAGAATAGCTT
CTGAATCGGGACAAATTCTCAGAGATTGGCAGAGGGATTGTCCTCATCTGGATTCCTGGG
GAAAAGAGCTCTCAAGTAAAGGGTATTCCAGTTTTCCCCTTTTGTGCCAAGAGAGTATTT
GAATTCCAGACCTGTCTCAGTGGCTCAGGTGCCTTGGGGCAGACACATGGGGCACGCATG
TTGACGAGGCCACCTGGCAGGGCTCCCTGGAGCTCAAAGCTATAGACTGGGCACTGGCTA
CACAGAGAAATTCGTAGGAAGCAAGATGTAACAGATTCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QACTSSDYLDRTIPDHNFLFPEFEIVIETEDEITPEVVEKEHESEILGSMGEALEDELDSMAKHESKEDKIFQKF-KTKIALEPEQVLR-YGRGIAPVWI
QA......LD..IPD...LFP..E...ETED..TPEVVEK....E...S.GEA.E.ELD..AKHES.E....QK..K..IA.E..Q.LR..GRGI...WI
Retrocopy
QAGLFTNHLDKRIPDCHLLFPGLETRMETEDGVTPEVVEKDDAAEMIESVGEAPERELDALAKHESRENSTLQKL/KPRIASESGQILR\IGRGIVLIWI


Parental protein
SGENIPQEKDIPNCPCGAKRIFEFQV-MPQLLNHLKADRLGRSID-WGVLAVFTCAENCRLGTGYTEEFVW-KQDITNT
.GE...Q.K.IP..P..AKR.FEFQ....Q.L..L.AD..G...D..G.LA....A...RLGTGYTE.FV..KQD.T..
Retrocopy
PGEKSSQVKGIPVFPFCAKRVFEFQT/LSQWLRCLGADTWGTHVD/RGHLAGLPGAQSYRLGTGYTEKFVG/KQDVTDS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide