RetrogeneDB ID:
retro_mputfur_708
Organism:
Location:
GL896938.1:3254863-3255187 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.85 %
Coverage:
67.5 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
SCOC
Parental gene aliases:
No gene alias available
Parental gene description:
short coiled-coil protein [Source:HGNC Symbol;Acc:20335]

Genomic region (view in browser)





>retro_mputfur_708
CTCCCACTCCCAGCACCTCCAATGGCAGACCATTTATCAAGGATTCTGTACTCAATGCCC
AAAAGTCTGTTACTGGAGATGATGAATGCCATCATGGATACAGTTGATGCTGAAAATCAG
GTGGAACTGGAGAAAAAAACGCAACTTATTAATCAACTGCTGGAACGCCAACATGCACTT
GAAGATCTGTGAGCAAGAGTAGATGCAGTTAAGAAAGAAAATCTGAAGCTAAAATCAGAA
AACCGAGTTCTTGGATAATATTTAGAAAACCTCATGTCAGCTTCTAGTGTTTTTCAAACA
ACTGACACAAAAAGCCAAAGAAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LPPPQFSVADHSSRILYPRPENLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQT
LP.P....ADH.SRILY..P..LL..MMNA.MD.VDAENQVELE.KT.LINQ.LE.QH.LEDL.ARVDAVK.ENLKLKSEN.VLG.Y.ENLMSASSVFQT
Retrocopy
LPLPAPPMADHLSRILYSMPKSLLLEMMNAIMDTVDAENQVELEKKTQLINQLLERQHALEDL*ARVDAVKKENLKLKSENRVLG*YLENLMSASSVFQT


Parental protein
TDTKSKRK
TDTKS.RK
Retrocopy
TDTKSQRK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide