RetrogeneDB ID:
retro_mputfur_712
Organism:
Location:
GL896939.1:10677812-10678391 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
64.5 %
Coverage:
70.25 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_712
ATGTCTGGAGCCCTCGATGTCCTACAAATGAGGGAGGAGGATGTCCTCAAAGTCCTCACA
GCAGGAACCCACTTAGGTGGCACCAACCTTGACTTCAAATGGAACAACGGTCCATCTGCA
GGAGGAGGGGTGATGGAGGCCACCTCATGACTCTGCGGAGGAACTGGAAGAAGCTTCTGC
GGGCAGCTCCTGCCACTCCTGCCGTTGAACACGTGGCTGATGTCAGTGTCCTCTCATCCA
GGAATCCTGGCCAGCGCGCTGGGCTGAAGTCCGCTGCTGCCACTGGGGCGCTCCTACTCC
CGGCCGCTTCACCCCTGGAACATCCACTAACCAAAGGGAGGCAGCCTTCTGGGAGCTAGA
CTGCTGGCGGTGACCGACCCCCGGGCTGACCACCAGCCTCTCACAGAGGCGTTCACCTGC
CCGCCACCGTTCTGTGGAGCACACAGCTCTCCATGCTCTGTGGACGGCTCTACCCCGTGC
AAGAACACAGGAGCTCTCTCCGTGGGTCCGAGGTGGCGGATGCTGGCCGGGGGTGTTGTG
CGCATGCGTGGCCCCATTTCCCGTGACCACCCGGGCGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDF-QMEQ-YIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGA-T
MSGALDVLQM.EEDVLK.L.AGTHLGGTNLDF.QMEQ..I..R..DG.....L.R.W.KLL.AA.A..A.E..ADVSV.SSRN.GQRA.LK.AAATGA..
Retrocopy
MSGALDVLQMREEDVLKVLTAGTHLGGTNLDF/QMEQRSICRRRGDGGHLMTLRRNWKKLLRAAPATPAVEHVADVSVLSSRNPGQRAGLKSAAATGA/A


Parental protein
PIAGRFTPGTFTNQIQAAFRE-PRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWE
P..GRFTPGT.TNQ..AAF.E..RLL.VTDPRADHQPLTEA.....P....C...S....VD...PC.N.GA.SVG..W.MLA..V.RMRG.ISR.HP.E
Retrocopy
PTPGRFTPGTSTNQREAAFWE/ARLLAVTDPRADHQPLTEAFTCPPP---FCGAHSSPCSVDGSTPCKNTGALSVGPRWRMLAGGVVRMRGPISRDHPGE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide