RetrogeneDB ID:
retro_mputfur_713
Organism:
Location:
GL896940.1:1400374-1400745 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.34 %
Coverage:
97.66 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
Gm11808
Parental gene aliases:
No gene alias available
Parental gene description:
predicted gene 11808 [Source:MGI Symbol;Acc:MGI:3649356]

Genomic region (view in browser)





>retro_mputfur_713
ATGCAGATCTTCGTGAAAACCCTGATGGGCAGGACCATCACCCTCAAGTTTGACCCCAGT
GACACCACTGAGAATGTCAAAGCCAAAAATCCAAGACAAGGAGGGGATCCCCTTGACAGC
AGCATCTGATTTTAGCGGGCAAACAGTGAGAAGATGGCAGCACTCTGTCAGATTACAATA
TCCGGAAAGAGTCCAGCCTGCACTTGGTGCTTCGCCTCTGGGGTGGCATCATTGAGCCTT
CCCTCCGCCAGCTGACCCAGAAATACAACTACGACAAGATAATCTGCTGCAAGCGTTATG
CTCGCTTGCATGCCTGCGCTGTCATCTGCCACAAGAAGTGCGGCCACACCAACAACCTGC
GCCCCAAAAGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MQIFVKTLTGKTITLEVEPSDTIENVKAK-IQDKE-GIPPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICR
MQIFVKTL.G.TITL...PSDT.ENVKAK.IQDKE.G.P.D.QQ.LI.AGKQ.EDG.TLSDYNI.KES.LHLVLRL.GGIIEPSLRQL.QKYN.DK.IC.
Retrocopy
MQIFVKTLMGRTITLKFDPSDTTENVKAK\IQDKE/GDPLD/QQHLILAGKQ*EDGSTLSDYNIRKESSLHLVLRLWGGIIEPSLRQLTQKYNYDKIICC


Parental protein
KCYARLHPRAVNCRKKKCGHTNNLRPKK
K.YARLH..AV.C..KKCGHTNNLRPK.
Retrocopy
KRYARLHACAVICH-KKCGHTNNLRPKR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide