RetrogeneDB ID:
retro_mputfur_717
Organism:
Location:
GL896940.1:3968536-3969530 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.73 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_717
ATGGTGAAGGTTAGACTAAATGGATTTGGCCTTATTGGGCACATGGTTACCAGGTCTGCC
TACCATTCTGGTAGAGTGGATATTGTCACCATGAATGACCTCTTCATAGACCTTAACTAC
ATGGCCTACATATTCTAGTATGATTCCAACCACAGCGAATTCCATAGCACAATCAAGGCT
GAGAAAAGGAAAATTGTCATCAGTGGAAAGCCTATCTCCATCTTTCAGGAGTGAGATCCC
CACATCAAAAGGTGTGATGCTGGTGCTGAGTATGTTGTGGAGTCCACTGGGGTCTTCACC
ACCATGGAGAACACTGGGGCTCACTTGAAGGGTAGAGCCAAGGTCATCATATCTGCCCAT
TCTGCTGATTCCCCCATGTTTGTGAAGAACATGAACCATGAAAAGTATGACAGCTCCTTC
AAGATTGTCAGCAATGCCTCCTGCACCACCAATAGCTTGGCCCCTCTGACCTAGGTCATC
TATGACAACCTCAGCATCATGGAGGGACTCATGGCCACAGTCCATGGAATCACTGCTACC
CAGAAGACCATAGAAAGCCCCTCTAGGAAACTGGAAACTGGTGTAGTGGCTGAGTGGCTG
CCCCAAACATCATCCCTACTACTTGGCACTGCCAAGGTTTTAGGTAAAGTCATTCCTGAG
CTGAATGGGAAGCTCATTGTCATGGCCTTCTGAGTCCCCACCCTCAATGTGTCAGTCGTG
GATCTGACCTGCTACCTGGAGAAAGCTGCCAAATATGACAACATCAAGAAGGTGGTGAAG
CAGGCAACAGAGGGCCCCTCAAGGGCATGCAGGGCTACACTGAAGACCAGATTGTCTCCT
GTGACTTTAACAGTGACACCTACTCTTCCTCCTTCAATGCTGGGCTGACATTGCTTACAT
TGACCACCTTGTCAACTTCATTTCCTGGTATGACAATGAATTTAGTTATAGCAACCAGAA
GGTGGACATTATGGTCCACATGGCCTCCAAGGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGVF
MVKV..NGFG.IG..VTR.A..SG.VDIV..ND.FIDLNYM.Y.F.YDS.H..F..T.KAE..K.VI.GK.ISIFQE.DP..IK..DAGAEYVVESTGVF
Retrocopy
MVKVRLNGFGLIGHMVTRSAYHSGRVDIVTMNDLFIDLNYMAYIF*YDSNHSEFHSTIKAEKRKIVISGKPISIFQE*DP-HIKRCDAGAEYVVESTGVF


Parental protein
TTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGA
TTME..GAHLKG.AK.VIISA.SAD.PMFV...NHEKYD.S.KIVSNASCTTN.LAPL..VI.DN..I.EGLM.TVH.ITATQKT...PS.KL.....G.
Retrocopy
TTMENTGAHLKGRAK-VIISAHSADSPMFVKNMNHEKYDSSFKIVSNASCTTNSLAPLT*VIYDNLSIMEGLMATVHGITATQKTIESPSRKL---ETGV


Parental protein
AQNIIPASTGAAKAVGKVI----PELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASE-GPLKGILGYTEDQVVSCDFNSDTHSSTFDA
.....P..........KV.....PELNGKL..MAF.VPT.NVSVVDLTC.LEKAAKYD.IKKVVKQA.E.GPLKG..GYTEDQ.VSCDFNSDT.SS.F.A
Retrocopy
VAEWLPQTSSLLLGTAKVLGKVIPELNGKLIVMAF*VPTLNVSVVDLTCYLEKAAKYDNIKKVVKQATE/GPLKGMQGYTEDQIVSCDFNSDTYSSSFNA


Parental protein
G-AGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
G.A.IA..DH.V..ISWYDNEF.YSN..VD.MVHMASKE
Retrocopy
G/ADIAYIDHLVNFISWYDNEFSYSNQKVDIMVHMASKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide